| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3264 |
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| Symbol | |
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| ID | 4280166 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3905797 |
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| End bp | 3907557 |
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| Gene Length | 1761 bp |
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| Protein Length | 586 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638136082 |
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| Product | spermidine synthase |
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| Protein accession | YP_751939 |
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| Protein GI | 114564425 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.239403 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAACAC CTTTGCTCGA TGAACTTCCC ACCAATACAA CACTGGGGGA CTCGCAGCAA
AGTCCTCTAT CATCCCGTCA AGTATCGAAG TTTGATGATG CCTTATTACT CGGCATCATG
GCTTCGCTGG CGGGATGTGG CCTTATCTAT GAATATTTAC TGTCACACTA TGCCGGCCGA
ATTCTCGGCG CACTAGAAGC TGCCATTTAC ACCATGATTG GGTTAATGAT TGTGTCTATG
GGTGTGGGCG CATTTGCTGC CCGTAAAATA AAATGCGCGT TTACAGGCTT TGCCATGCTC
GAATTAACCG TGGCACTGTG TGGCTCATTT GCCATTATCG TTACCGCTGC CGTGATTGGA
TTTGGTCAAC AACTTCCATT AACTATCGCC AATACATTGG GCTTGCCGCC CGATCATTTA
CCCAATGGTG GCTTTATTGC CAGCCTGCAA ACCCTTAGTG AATTCTTACC TTATGTGTGG
GGAGTATTGC TTGGGTTAAT GATTGGCATG GAGATCCCAC TTATTGCTCG AGTTCGGCAA
TCCTTATCTG AAGCACACTT ACTGCATAAT GCCGGCACCA TATATGGTGC CGATTACATT
GGTGCTGGTA TCGGCGCCGC TATCTGGGTT GGTTTTATGT TGTCGATTGA TATTCAACTA
GCAGCGGCAT TAACAGCCAG TGTTAATTTA CTCGCTGGGC TAGTATTTAT TTGGCGATTT
TGGGCACAGA TCCGTTATGC TAAGTGGTTG CTAGTAGGCC ACATTATTGC CAGCGTTGTG
ATTGGCTTAC TCGCGGTTAA AGGCCCTAGC TGGGAACAGC ATTTTAATAA TCTATTATAT
AAAGATCATG TGGTTTACGC TAAAGCAACA CGGTTCCAGC AGCTCAACTT TACTGAACGT
TTGCGCGGTG GCGAATTACC TCCGGTTTAT AATTTATACA TTAATGGTCG TCTGCAATTT
TCGAGCAGTG ACGAGCATAT TTATCACAGC TTCCTAGTGC ATCCCACACT GGCGGCCAGC
GCACGTCACG ATAACGTGTT AATTATTGGC GGTGGTGATG GCTTGGGGCT AAAACAAGTG
CTCAAATGGC AACCAAAAGC CGTTACCTTA ATGGATTTAG ATAAAGACTT GCTGGCACTG
TTTAAATCGC CTCCGGCAGA TATGCCCAAG CACTTAAGAG ATGCATTACT GACGTTAAAC
GGCAATGCCT TAAACGATCC TCGCTTAACG CTTATGGTCG ACGATGCGTT TAACGGTGTC
GATAAGCTAA TTCAAAATGG CAAAATGTTT GATGCCATCA TTGTTGACTT ACCCGACCCA
AGTCATCCAG ACTTAAATAA ACTTTATTCA GATTTATTTT ATCGCAAGCT CAACGAGTTA
CTCAGCGCTG ATGGCGTGAT CACGGTGCAA TCAACCTCAC CTTATCATGC CCAAAAAGCA
TTTATGTCGG TCGGAAAAAC ACTGACTGCG GCTGCATTTA ATGTAAAGCA GTACCACCAT
AATGTCCCTA GCTTTGGTGA ATGGGGCTGG AGCATTGGCA GTAAAATGGG TAAAAACCCG
CAGCAACGAT TGGCTGCAAT AGATCAAATT CCGGTACCAG AAGAGTGGCT TACCCCAGGG
CTTATCCACG CTTCATTTGA GTTTCCAAAG CATTTCTATA GCGATATAGA CAACATTAAA
GTCAATGAAA TTGGTTCACT ACAGCTGTAT CACTACCATT TAGCGGCTTG GTCAGAAAAC
GAAGTAATTA ATCTTTTTTA A
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| Protein sequence | MTTPLLDELP TNTTLGDSQQ SPLSSRQVSK FDDALLLGIM ASLAGCGLIY EYLLSHYAGR
ILGALEAAIY TMIGLMIVSM GVGAFAARKI KCAFTGFAML ELTVALCGSF AIIVTAAVIG
FGQQLPLTIA NTLGLPPDHL PNGGFIASLQ TLSEFLPYVW GVLLGLMIGM EIPLIARVRQ
SLSEAHLLHN AGTIYGADYI GAGIGAAIWV GFMLSIDIQL AAALTASVNL LAGLVFIWRF
WAQIRYAKWL LVGHIIASVV IGLLAVKGPS WEQHFNNLLY KDHVVYAKAT RFQQLNFTER
LRGGELPPVY NLYINGRLQF SSSDEHIYHS FLVHPTLAAS ARHDNVLIIG GGDGLGLKQV
LKWQPKAVTL MDLDKDLLAL FKSPPADMPK HLRDALLTLN GNALNDPRLT LMVDDAFNGV
DKLIQNGKMF DAIIVDLPDP SHPDLNKLYS DLFYRKLNEL LSADGVITVQ STSPYHAQKA
FMSVGKTLTA AAFNVKQYHH NVPSFGEWGW SIGSKMGKNP QQRLAAIDQI PVPEEWLTPG
LIHASFEFPK HFYSDIDNIK VNEIGSLQLY HYHLAAWSEN EVINLF
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