| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3260 |
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| Symbol | |
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| ID | 4280162 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3899835 |
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| End bp | 3900818 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638136078 |
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| Product | diguanylate cyclase with GAF sensor |
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| Protein accession | YP_751935 |
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| Protein GI | 114564421 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2203] FOG: GAF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTGCTGG CACCGATACC TGACAATGAA TACACTCGAA TCGAAACACT TCGAGGGCTG
AACGTACTCG ACACGATCGC TGAAGAGCGT TTTGATCGTA TCACTCGGTT GGCTAAACGA
TTGTTTTCAG TATCGATTAG TGTGGTGAGT TTAATCGACT CAGAGCGCCA ATGGTTCAAG
TCTGTGCAGG GGTTGGATAT ATGTGAAACA CAGCGTGATA TTTCATTCTG TGGCCATGCT
ATTAATCAAC AACATGTATT AGTTGTGCCA GATGCGCTAA AAGATGAACG TTTTGCCGAT
AACCCTCTTG TGTTGGCGGC ACCTAATATT CGATTTTATG CCGGCTATCC GTTAACTATG
CCCAATGGTG TGAGGGTTGG CACTTTGTGC ATTATTGATG ACAAGCCGAG ATCCTTCTCT
AAAGATGATG AAGCTGCTTT AGAAGACTTG GGTAAAATTG TCGCAGAAGA GTTACTGTCG
ATACAGCAAA ATACCTTAGA TGCGCTAACC GGTATTTCTA ATCGTCGCGG CTTTGAATTA
CTTGCTCATA AGGCGATTGC TTACGGTGAT AGGCTTGGTT TTGAAACGTG TTTAATTTTC
TTTGATTTAG ATTATTTTAA AGCAATTAAC GACCAGTTTG GCCATGAAGA AGGTGATACA
GCCTTGAAGA CTTTTGCTGG CTTATTGATC GACAGCTTTC GCGAATCGGA TATTATTGCC
CGCTTTGCTG GTGATGAATT TGTGGTCATG CTGAGCCAAA GCGATGAAGT CAGCGTTAAT
AGTGTATTAC AGCGTTTTCA ACAGTGCATT AATCAACATA ATTTGCAAAG CGGTAAACCA
TACCATTTAA GGTACAGTAA GGGCGTGGCA CATCGACAAG CCAGGCAGTC ATTATCGTTA
AATGATTATT TGGTTAAGGT GGATAAAGCC ATGTTTGTCG ATAAAGAAAA ACATCACCAG
AGAACTCAAA TTGATGTGAA ATAG
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| Protein sequence | MLLAPIPDNE YTRIETLRGL NVLDTIAEER FDRITRLAKR LFSVSISVVS LIDSERQWFK
SVQGLDICET QRDISFCGHA INQQHVLVVP DALKDERFAD NPLVLAAPNI RFYAGYPLTM
PNGVRVGTLC IIDDKPRSFS KDDEAALEDL GKIVAEELLS IQQNTLDALT GISNRRGFEL
LAHKAIAYGD RLGFETCLIF FDLDYFKAIN DQFGHEEGDT ALKTFAGLLI DSFRESDIIA
RFAGDEFVVM LSQSDEVSVN SVLQRFQQCI NQHNLQSGKP YHLRYSKGVA HRQARQSLSL
NDYLVKVDKA MFVDKEKHHQ RTQIDVK
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