| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3251 |
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| Symbol | |
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| ID | 4280153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3888922 |
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| End bp | 3889992 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638136069 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_751926 |
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| Protein GI | 114564412 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.482288 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAAAGA ATATGACTCC AGATCAACAA TTTGCACGAC TCGTTAGAGT ATCTATATTC
CTGTTTGTAT CAGTGTTTGG CTACTTTATG TTTGCCGACG CTGTGATGCC AATGACGCCA
CAAGCCATGG CAACACGAAT GGTCACTAAA GTAACGCCGC AAGTCAGTGG TAAAATTGCT
TCTATTGCAG TCGAAAATAA CCAATTAGTG GCTAAAGGTG ATGTGTTATT TAGCATCGAC
TCAGCCCCTT ATGAGTTAGC GGCTGAGCAG GCTACATTGG CGTTAGAGCA AGCAAAACAA
GATAACGCCG AACTTGATGC ATCGATACTT GCTGCCAAAG CAGATGTTCA GGCAAATCAA
AGTAGTGCAC AGCAGAGAAA CAGTGAAGCA AAACGCCTTG ATGCATTGTA CGCTTCTCGA
GGTGTATCGC AGCAGTTAAC CGATCAAGCT CAAAGTGATG CCGTTACGGC TGAGGCTAAC
TTACTTGCCG CCAAAGCACG CTTAACTAAG CTAGTGGTAA GCCGTGGACG CAATGGCGAA
GATAATTTAA AAGTGCGTCA AGCTCGAAAC CGTTTGGCTC AAGTAGAGTT AAACCTGTCT
TACACTCAAA TTCGCGCCGA TCAAAATGGG GTGGTAACCA ACTTACAGTT AGAAGTCGGC
AGCTTTGCCA CTGTCGGTCA GCCGCTATTG GCTGTAGTGT CAGAAATCGT TGATATTATT
GCTGACTTTA GAGAAAAAAG CTTACGAGGT ATTGAGCCAC AATCAACTGC ACTTATTGCA
TTTGATGGTC AACCTGGGCG TTTGTACCAT GCCAAAGTGA GTACCGTAGA TGCTGGTGTG
AGTGCAGGAC AATTTGATGC AAATGGCCGT TTAGCAGATC CGCAAGAGTC TGTACGTTGG
GTACGTGACG CTCAGCGTTT ACGTTTACAC CTTGAACTTG ACCACCAAGG CGTTAATGCA
TTACCTGCTG GAGCACGTGC AACGGTGCAA TTAGTCCCCA ATAGTGGTTT GCTTGGCTTC
TTAGCTAAGG TTCAAATCAA GGTTATCAGC ACACTGCATT ATATTTATTA A
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| Protein sequence | MRKNMTPDQQ FARLVRVSIF LFVSVFGYFM FADAVMPMTP QAMATRMVTK VTPQVSGKIA
SIAVENNQLV AKGDVLFSID SAPYELAAEQ ATLALEQAKQ DNAELDASIL AAKADVQANQ
SSAQQRNSEA KRLDALYASR GVSQQLTDQA QSDAVTAEAN LLAAKARLTK LVVSRGRNGE
DNLKVRQARN RLAQVELNLS YTQIRADQNG VVTNLQLEVG SFATVGQPLL AVVSEIVDII
ADFREKSLRG IEPQSTALIA FDGQPGRLYH AKVSTVDAGV SAGQFDANGR LADPQESVRW
VRDAQRLRLH LELDHQGVNA LPAGARATVQ LVPNSGLLGF LAKVQIKVIS TLHYIY
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