Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3235 |
Symbol | |
ID | 4280137 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3872786 |
End bp | 3874225 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638136053 |
Product | UDP-N-acetylmuramate |
Protein accession | YP_751910 |
Protein GI | 114564396 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0773] UDP-N-acetylmuramate-alanine ligase |
TIGRFAM ID | [TIGR01081] UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.157661 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCACGTAC ACATTTTAGG TATTTGTGGC ACTTTTATGG GCGGTTTAGC CCTACTTGCC CGCGCAATGG GCCATAAGGT GACCGGCAGT GATGCCAACG TTTATCCACC GATGAGCACC CAGCTTGAGC AACAAGGTAT CGAGTTAATC CAAGGTTTTG ATCCAGCTCA ATTAGGTAAA GAAGGCGACA ATCAACCAGA CTTAGTGGTT ATTGGTAACG CCATGAGTCG TGGTAACCCG TGTGTAGAAG CGGTACTAAA TCGCGGCATA AAATATACAT CTGGGCCGCA GTTTTTATCT GAACATATTT TACAAGACCG TTGGGTATTG GCTGTAGCGG GTACACACGG TAAAACTTCT ACTTCCAGCA TGCTAGCGTG GGTTTTAGAA TACTGTGGTT ACGAGCCAGG TTTTTTAATT GGCGGTGTAC CGCAAAATTT TGGCGTGTCA GCTCGTTTAG GTAACTCAGT ATTTTTTGTA GTAGAAGCCG ACGAATACGA CAGTGCCTTT TTTGATAAAC GTTCTAAGTT TGTTCATTAC CATCCTCGCA CCTTAGTGAT CAATAATCTT GAATTTGATC ATGCCGATAT ATTTGCCGAC TTAGCGGCGA TCCAACGCCA GTTTAATCAC GTTATTCGTA CTGTGCCGGG AGAGGGCAAG GTGATTTGGC CTAGCGACGT TGAAGCCGTG CAACAAGTGA TTGATATGGG CTGTTGGAGC GAGCAAGAAA TCTATTCTAA AGCCACAAGC TTAACCACTG GTTTAGCCGA GCATTCTGTT AATGTTTCAG CGAACCAAGG TGAACCCAAT GCTTGGCAGC CGCGTACTAT TGCAGACGAT GGTCATGAGT TTGAAGTACT GTTTAAGGGC GAGTCGCAAG GGATAGTAAA CTGGTCATTA ATAGGTCAAC ATAATATTGA AAACGCCATA ATGGCAATAG CGGCTGCTCG TCATGTGGGC GTAGCGCCAA GTCATGCTAT TGAGGCGTTA GCACAATTTA GTCCACCAAA GCGTCGTTTA GAGCTATTAG CGACCGTAAA TGGCGTGTCT GTGTATGACG ATTTTGCTCA TCATCCCACC GCTATTGCCA CTACTTTACA AGGCTTACGA GCTAAAGTAG CTTCCAGCGA CAATGCTAAT GGCAACATTA TTGTGGTGTT AGAGCCCCGC TCAAACACCA TGAAAAGCGG AGTACATAAA GATACTCTTG CCAACTCGAT GGTATTAGCC GATGTGGGCT ACTTATATCA AGCAGACAAT ATTGACTGGG ACATCAAAGC CAGTATGGCT AATGCGCCAA TCCCTGTGAC TGTGTTTAAC AACATTGAAG ATATTATTAA TGCAGTTGCC GCTACCGCAA ATCAAGGTGA TACCGTAGTT ATCATGAGTA ATGGTGGTTT TAATGGTATT CACCAAAAAA TGATTAAAGC TTTAGCGTAA
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Protein sequence | MHVHILGICG TFMGGLALLA RAMGHKVTGS DANVYPPMST QLEQQGIELI QGFDPAQLGK EGDNQPDLVV IGNAMSRGNP CVEAVLNRGI KYTSGPQFLS EHILQDRWVL AVAGTHGKTS TSSMLAWVLE YCGYEPGFLI GGVPQNFGVS ARLGNSVFFV VEADEYDSAF FDKRSKFVHY HPRTLVINNL EFDHADIFAD LAAIQRQFNH VIRTVPGEGK VIWPSDVEAV QQVIDMGCWS EQEIYSKATS LTTGLAEHSV NVSANQGEPN AWQPRTIADD GHEFEVLFKG ESQGIVNWSL IGQHNIENAI MAIAAARHVG VAPSHAIEAL AQFSPPKRRL ELLATVNGVS VYDDFAHHPT AIATTLQGLR AKVASSDNAN GNIIVVLEPR SNTMKSGVHK DTLANSMVLA DVGYLYQADN IDWDIKASMA NAPIPVTVFN NIEDIINAVA ATANQGDTVV IMSNGGFNGI HQKMIKALA
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