| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3234 |
|---|
| Symbol | |
|---|
| ID | 4280136 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3872100 |
|---|
| End bp | 3872759 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638136052 |
|---|
| Product | aromatic acid decarboxylase |
|---|
| Protein accession | YP_751909 |
|---|
| Protein GI | 114564395 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0163] 3-polyprenyl-4-hydroxybenzoate decarboxylase |
|---|
| TIGRFAM ID | [TIGR00421] polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0846148 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTATG CCAAAAAAGC CAAAGCAATT AGCCTAGCCT GGACGGGCGC ATCTGGCGCG
CCTTATGGCA TTAAATTGCT TGAATGTTTG CTTGCGGCCG ATTACCAAGT GTTTTTAATG
ATATCCAGTG CCGCACGGGT GGTGTTAGCA ACAGAACACG GTTTGCAATT AAGCGCGAAC
CCAGACAAAG CGAAAGCACA ATTACTCGAA CAACTGCATA ACGTTGATGA ACCGTTAAAA
GGTGAATTAG TGGTATTAGG CAAAGATGAA TGGTTTTCGC CGCCAGCATC TGGCAGCGCT
GCGCCTAAAC AAATGGTCAT TTGTCCATGC TCAACAGGCA CATTGGCTGC TGTTGCAACG
GGTATGAGTA ATCATTTGCT CGAAAGAGCA GCAGATGTAG TATTAAAAGA AAGAGGGCAA
TTGATTCTTG TTCCGCGGGA AACTCCTTTT AGTGCCATAC ACTTAGAGCA TATGTTAAGC
CTAACCCGTA ATGGCGCGAC CATCATGCCA GCGGCACCAG GCTTTTATCA TAATCCCAAA
TCAGTAGAAG ATCTGGTAAA CTTCATGGTT TCCCGAATAC TTGATCATTT GGGAATTGAA
CACGACTTAA CGAGTCGCTG GGGATATGGA CATACTCAGT CACACGACAT CGACAATTGA
|
|---|
| Protein sequence | MAYAKKAKAI SLAWTGASGA PYGIKLLECL LAADYQVFLM ISSAARVVLA TEHGLQLSAN
PDKAKAQLLE QLHNVDEPLK GELVVLGKDE WFSPPASGSA APKQMVICPC STGTLAAVAT
GMSNHLLERA ADVVLKERGQ LILVPRETPF SAIHLEHMLS LTRNGATIMP AAPGFYHNPK
SVEDLVNFMV SRILDHLGIE HDLTSRWGYG HTQSHDIDN
|
|---|
| |