| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3232 |
|---|
| Symbol | |
|---|
| ID | 4280134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3870476 |
|---|
| End bp | 3871411 |
|---|
| Gene Length | 936 bp |
|---|
| Protein Length | 311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638136050 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_751907 |
|---|
| Protein GI | 114564393 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.479641 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACA CCAACAATGC ATTGGTGATC GAAAACCTTA AAAAAACCTA TAAAGGTGGC
GTAGAAGCCG TAAAGTCGAT CAGTTTGACG GTAAAGCAAG GTGACTTTTT TGCCCTGCTT
GGCCCCAATG GTGCGGGTAA ATCTACCACT ATCGGCATTA TCAGCTCATT GGTACAGAAA
ACCGCAGGAA CAGTGTCGGT ATTTGGTTTT GATATTGATA AGCAGCTCGA ACATGCCAAG
TTATGTATCG GGTTAGTGCC GCAAGAATTT AACTTTAATC AGTTCGAAAC CGTGCAACAA
ATAGTCGTTA ACCAAGCGGG TTATTATGGC GTACCAAAAG CGGTTGCATT AGAGCGCGCT
GAAAAATATC TCACCCAACT TGATTTATGG CAAAAGCGTC ACGCCCAAGC CCGCGAACTG
TCTGGCGGTA TGAAACGCCG TTTAATGATT GCCCGCGCGT TAATGCACGA ACCTAAATTA
TTGATTTTAG ATGAGCCAAC AGCTGGCGTA GACATTGAGC TGCGTCGTTC AATGTGGGAA
TTTTTAAAAC AAATCAACAA ACAAGGCGTG ACTATTATTT TAACCACTCA CTACCTTGAA
GAAGCCGAAA TGCTGTGCCG CACCATTGGT ATTATCGATA CCGGTTTGCT GGTGGAATGC
ACCACCATGA AGGCATTGTT GAGCAAGCTA GATGTTGAAA CCTTTATTTT CGATTTACGA
CACGATCTCG ACGTAGCACC ACAATTGAGC AACATGAATT GCCGTTTAAC TGACGCTCAC
ACATTAGAAG TGGATGTGGC CAAATCGAAC AACATTAATG AATTATTTAC CCAGTTAACC
GTCGCCAATA TCGAAGTGTT GTCAATGCGC AACAAAGCCA ACCGCTTAGA AGAATTGTTT
GTAGAACTGG TCGAAAAAGC CAAGGAGTCA AAATAA
|
|---|
| Protein sequence | MSNTNNALVI ENLKKTYKGG VEAVKSISLT VKQGDFFALL GPNGAGKSTT IGIISSLVQK
TAGTVSVFGF DIDKQLEHAK LCIGLVPQEF NFNQFETVQQ IVVNQAGYYG VPKAVALERA
EKYLTQLDLW QKRHAQAREL SGGMKRRLMI ARALMHEPKL LILDEPTAGV DIELRRSMWE
FLKQINKQGV TIILTTHYLE EAEMLCRTIG IIDTGLLVEC TTMKALLSKL DVETFIFDLR
HDLDVAPQLS NMNCRLTDAH TLEVDVAKSN NINELFTQLT VANIEVLSMR NKANRLEELF
VELVEKAKES K
|
|---|
| |