| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3227 |
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| Symbol | |
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| ID | 4280129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3864994 |
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| End bp | 3866073 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638136045 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_751902 |
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| Protein GI | 114564388 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.709302 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCATTT CCAATTTATG GGCAAGTGAG CTTGAGTATC GTCGTACAGT ATTAAAGGCA
GTGTTAATTG TCATTATTGT TGCTGGCGGT ATATTTGTGG TTAATAACTG GTTTAATGAT
TTTAAATTGT ATGCCATGGT TGAATTAGCG GTGGTATGTC TTTGTATTGG CATTCTTTTT
ATTCATAAAG CCACCCCAAA CCTCACATTG TGGTGCTTGG TTTTTTTGTT TGCACTTTAC
AGCGTTATTT TAATTGGCAT TTACAGTGCT TCATTTAATT CCGGGCTATT TACTTGGCTG
TTTATTATTC CTGTTTTGTC GTATCTGTTG CTGGGTATAA AGCTAGGTAC CCTATACACC
TGTGTGTATA TGATAGGTGG TGTGGGTATT TTGGTTAATG CTTTGCTGTT AGATATTGCA
ACAATTTACC CAATTACTAT CGCCAATATT GTTTTATGTT TGGCTGCTAT TTGGGCTTTG
TCTTTTAGTT ATGAATATAA ACGAGCTGAA GCCGTTGAAC GGTTACAAAA GATGGCATCA
CTTGACCCGT TAACTGGGCT AAATAATCGT TTATTGTTAG ATTCTATCTT CGACATGTTG
TGTGAAAGTT TACCCGAGCA GCATCAATCC GTATCGGTGT TAATACTTGA TCTTGACCAT
TTCAAACGGA TCAATGACCA ATATGGTCAT GATGTCGGTG ATAAAGTACT GGTAGAGGTG
TCGCGTATTA TCAATAGTGT ACGGCGTCAA AATGACTGGG CTTTTCGTTT AGGCGGGGAG
GAGTTTTGTA TGCTAATTCC TGATTCAAAT TTACAGCAAG CAGGTCAAAT AGCGGAACGT
TTACGCAAGG CTGTTGAGCT CGTTACCGTA ATTGATGGCA GTGAGCTAAA CCTTAGCATT
AGTATTGGGG TATCACGTTG GCCTGAAGAC GGTGCACATT TTTCGCAAAT TTATAAAACT
GCCGATGCGC GCTTATATCA AGCAAAAACG TTAGGACGAA ATAAAGTGAT TACTACTTTA
AATGAACAGC CAACCATTAA CACAGAGGCT AGCATCGAAG TGCAGACTCT TACTGATTAG
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| Protein sequence | MAISNLWASE LEYRRTVLKA VLIVIIVAGG IFVVNNWFND FKLYAMVELA VVCLCIGILF
IHKATPNLTL WCLVFLFALY SVILIGIYSA SFNSGLFTWL FIIPVLSYLL LGIKLGTLYT
CVYMIGGVGI LVNALLLDIA TIYPITIANI VLCLAAIWAL SFSYEYKRAE AVERLQKMAS
LDPLTGLNNR LLLDSIFDML CESLPEQHQS VSVLILDLDH FKRINDQYGH DVGDKVLVEV
SRIINSVRRQ NDWAFRLGGE EFCMLIPDSN LQQAGQIAER LRKAVELVTV IDGSELNLSI
SIGVSRWPED GAHFSQIYKT ADARLYQAKT LGRNKVITTL NEQPTINTEA SIEVQTLTD
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