| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3225 |
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| Symbol | |
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| ID | 4280127 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3861727 |
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| End bp | 3863874 |
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| Gene Length | 2148 bp |
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| Protein Length | 715 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638136043 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_751900 |
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| Protein GI | 114564386 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.251172 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACATG TAATGAAAAT CAATACTTTA CAGTTTAATA AATGTAAATT GGCTGTTGTA
TGTGCTTCTG CACTCTCTTT GAATAGTTAC TCTGCTATAG GGGAGGAAAA CGTAGAAGAG
ACTAAAGGCA GTATTGAAAC CATTAGTGTG GTGGGCCATA AACTGACCGA GCTGAGTTCT
AATAATAATG GTGGAGCCTT GGGTAATAAA ACTTTATTAG AAACCCCCTT TTCAGTAGAT
GTTATTTCGC TTGAAGATAT AGAAATTCGT CAGGTTAATA CTCTGGATAG TCTTTTTAGT
AGAGAAGCAT CTGTATCGGT TGATGGTAGT GCTTACAGTA CCTTTGGCTC AACTATTCGT
GTTCGTGGCT TACCTTTAGA CTATACCAAT AGTTTTAAAA TTAATGGTAT GTCTATCAAT
AATTTTAGTG GTGAACTCCC TTATGAAGCC TTCGAGCAAG TTACCTTACT AAAAGGAGCC
TCTGGCTTCA TGTATGGGAT GGCTGCACCT GGTGGCGTCG TTAACTATGT GACTAAAAAA
GCAACAGGCG ATAAATTTAT TGTTGATGTT GGCATGCGCA GTGACAGTGT ATTTAGTGGT
CATATTGATG CCAGTAAGCG TTTAGGTGAT AACGATGAGT ATGGTGTTAG GGTTAACCTT
GTTAAAGAGT CGGGGGACAC GTATTTAGAA GATGGCACAA TTGATCGTAA TACTGCAGCT
TTAGCATTTG ACGCACAATT AACCGATTCA CTTTATTGGA CTGTTGATGT TATTTATAAC
GATCGCTTAA CTGAAAATTC ATGGACTACA ATGAATAATT CGTTAGGCAG TACTGATTTG
CTTCCTGATA CTGTTAGCGG TACTCGCAGT ATTGGAGCTG ACGGTACCTT CGATGATTAC
AAAAATATCG TAGCGTTAAC CAGCCTAAAT TGGGACATTA ATGATAACTG GAGTGCTCGT
CTTGAGTATG ATTATTCTAA GAATGAGACT CGTTGGGTAA AAAGCTTAGC CTACTTACTC
AATAGTGATG GTGATGTTAA TATTTCCTTA TATGACCAGT ATTTTGATGT TAATTATGAT
CAAATTCAGG CTGTGATTAA CGGTGAGTTT GAAACCGGTA GCATTCGACA CAACCTGTTG
TTAGGTGCGT CATATCAGAA GTCTACAACG TATCGGAATG ATCCGCATCG CGTAGTAATG
TGGGGTTATG GAACCGATAA TCTGTTTAAT CCTGTTGAGA TTCCAACCTA TAATTCAACC
TTAGAAGATA ATCTATCTAT GGCTTGGATT GATAAACAAC AATCGGTTTA TCTCAGTGAC
TTTATTTCGC TAACCGATCA ATGGGAAGTC TTACTCGGTA TTCGATCTAA TCAAATTGAA
CATACGCCAA GCGAATATTT CTCTTCATAC CAAGCTTACA ATGAAGACCG CGCCCTAAGT
CCTACTGCTG CATTGATGTT TAAACCTGAT GATAAAACAA CATATTATGT CAGCTATGTT
GAATCGTTTG AGGGGACAAC GTCGTATGTT GGCGAGACTT ACGCAAACGC TGATGAGCTA
CTAGAACCAT TAGAAAGTAA GCAATATGAA TTGGGTGTTA AAACAGCTGG TGACGGTTGG
TCTTTAACGT CGGCACTATT TCGCATCGAA CGAGGCGCCA CACTGGTTAC TGGTGATAAT
TATTTAGTAC AGGATGGACT TAGCATTTAT CAAGGTTTGG AATTTAGTGG AGCATGGGAA
GTCACTGATA ATTTATCTCT ATACGGTGAC TTGATGTTAT TGGATGCCAC TTATGACAAG
ACAAATTCAG CGGTGGAAGG TAATGACGTT GCTGGTACAC CAAATCAACA GTTTAGCTTG
CAGACTAACT ATGAGGTCGA TGCAGTGCCT GGTTTAGCTG TTAATTTAGG CGCCAAATAC
TTTGGTGAAA CAACATTAGA TTCTAATAAT ACCTGGGAAT TACCTGCTTA TACTTTGTTT
TACACCGGTG TTAGCTATAG CACGATGATT GACTACAAAA CGCTAACCGT TATTGGTACC
GTTGATAATT TATTCGACGA AGAGTTTTGG GCAGCTGGTG ATGCTTATGG TGCATTGCGT
ATCGGTGAAC CTCGTAGTTT TGCTGTTAAA GTAAAGATGA GTTTTTAA
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| Protein sequence | MEHVMKINTL QFNKCKLAVV CASALSLNSY SAIGEENVEE TKGSIETISV VGHKLTELSS
NNNGGALGNK TLLETPFSVD VISLEDIEIR QVNTLDSLFS REASVSVDGS AYSTFGSTIR
VRGLPLDYTN SFKINGMSIN NFSGELPYEA FEQVTLLKGA SGFMYGMAAP GGVVNYVTKK
ATGDKFIVDV GMRSDSVFSG HIDASKRLGD NDEYGVRVNL VKESGDTYLE DGTIDRNTAA
LAFDAQLTDS LYWTVDVIYN DRLTENSWTT MNNSLGSTDL LPDTVSGTRS IGADGTFDDY
KNIVALTSLN WDINDNWSAR LEYDYSKNET RWVKSLAYLL NSDGDVNISL YDQYFDVNYD
QIQAVINGEF ETGSIRHNLL LGASYQKSTT YRNDPHRVVM WGYGTDNLFN PVEIPTYNST
LEDNLSMAWI DKQQSVYLSD FISLTDQWEV LLGIRSNQIE HTPSEYFSSY QAYNEDRALS
PTAALMFKPD DKTTYYVSYV ESFEGTTSYV GETYANADEL LEPLESKQYE LGVKTAGDGW
SLTSALFRIE RGATLVTGDN YLVQDGLSIY QGLEFSGAWE VTDNLSLYGD LMLLDATYDK
TNSAVEGNDV AGTPNQQFSL QTNYEVDAVP GLAVNLGAKY FGETTLDSNN TWELPAYTLF
YTGVSYSTMI DYKTLTVIGT VDNLFDEEFW AAGDAYGALR IGEPRSFAVK VKMSF
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