| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3216 |
|---|
| Symbol | |
|---|
| ID | 4280118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3852309 |
|---|
| End bp | 3853712 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638136034 |
|---|
| Product | ATP-dependent RNA helicase DbpA |
|---|
| Protein accession | YP_751891 |
|---|
| Protein GI | 114564377 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGTCAGT CTACAGAACC GGTCGTTAAC ACGGCTTTTA CATCACTTAA ATTAAAACCT
GAATTGCTTG AAAACCTCCA AACTATGGGT TTTGAATCGA TGACTCAGAT CCAAGCTGAG
AGCTTACCGC CTATTTTGGC CGGTGAAGAT GTTATCGGTC AAGCGATGAC GGGTTCAGGT
AAAACAGCTG CCTTTGGTTT AGGACTGCTC AATAAACTGG ATGTAAAACG TTTTCGCATC
CAAACCATGG TGCTATGCCC AACGCGTGAG CTAGCCGACC AGGTAGCGAA AGACATTCGT
ACCTTGGCCC GTGGTATTCA TAACGTTAAA GTACTGACAC TTTGTGGTGG CGTACCAATG
GGACCGCAAG TTGGTTCATT AGAGCACGGT GCACACATTA TTGTCGGTAC ACCAGGTCGT
ATTGTTGATC ATTTAGATCG CAACCGTTTA GATTTAAGTA ACATGAATAT GCTGATTTTA
GATGAAGCCG ACCGCATGTT AGAAATGGGC TTTCAACAGC ATATTGATCA AATCATTGCT
GCGGCTCCTC GTGAGCGTCA AACATTGTTG TTTAGTGCCA CGTTCCCAGA TCAAATCCAA
GCGATTGCCG ATCAAATTCT GTATAAACCG GTAATGGTTA AAGTCGAAGC TAAACACGAT
AACCTCACTA TCGATCAGCA TTTTTATCGT ATTGAAGATA ATCAGGGCCG TCTTGAGGCA
TTGCGTTTAT TGTTATTAGA TAAGCAGCCT GAAAGCGCAG TCGTGTTTTG CAATACCAAG
CGTGAAACCC AACAAGTGGC TGACTCATTA CATGAGTTTG GCTTTAGCGT ACTAGCATTA
CATGGCGATT TAGAGCAGCG CGATCGCGAT CAAATGTTAT TGCAGTTTGC TAACCGTAGT
GCGCGTATTT TAGTTGCTAC CGACGTAGCA GCACGTGGTT TGGATATTGA TGAGTTAGAC
GCAGTATTTA ACTACCATAT TGCTTACGAT ACTGAAGTGC ATATTCACCG TATCGGCCGT
ACTGGCCGTG CTGGCAGTTC TGGAGCCGCA TATACTTTCT TTGGTGAAGA AGACGGTTAC
AAAATGGCGA TGATTGAAGA AGCCATGAAC AAAGATGTCG TCAGTGAGCC TTTACCGCCA
ATGAGTGCGC TAAACAAACA ACCGCTTGCT GCTGAAATGA TCACGATTCA GATTGAAGCT
GGTAAAAAGC AAAAAATCCG TCCAGGTGAC ATTGTTGGGG CATTAACAGG TGGCAATGGT
TTAGATTTTA ACGATATTGG TAAAATTAAA GTGACTGATT TTCGCGCTTA CTTTGCCGTA
AAAAGCAATG TGTCTAAACA AGCGATGAAT ATCATCAGTA AAGGTAAGTT AAAAGGCCGT
AGCTATCGTG CTTGGTTCAT GTAA
|
|---|
| Protein sequence | MSQSTEPVVN TAFTSLKLKP ELLENLQTMG FESMTQIQAE SLPPILAGED VIGQAMTGSG
KTAAFGLGLL NKLDVKRFRI QTMVLCPTRE LADQVAKDIR TLARGIHNVK VLTLCGGVPM
GPQVGSLEHG AHIIVGTPGR IVDHLDRNRL DLSNMNMLIL DEADRMLEMG FQQHIDQIIA
AAPRERQTLL FSATFPDQIQ AIADQILYKP VMVKVEAKHD NLTIDQHFYR IEDNQGRLEA
LRLLLLDKQP ESAVVFCNTK RETQQVADSL HEFGFSVLAL HGDLEQRDRD QMLLQFANRS
ARILVATDVA ARGLDIDELD AVFNYHIAYD TEVHIHRIGR TGRAGSSGAA YTFFGEEDGY
KMAMIEEAMN KDVVSEPLPP MSALNKQPLA AEMITIQIEA GKKQKIRPGD IVGALTGGNG
LDFNDIGKIK VTDFRAYFAV KSNVSKQAMN IISKGKLKGR SYRAWFM
|
|---|
| |