Gene Sfri_3204 details

Gene Information

• Locus tag: Sfri_3204
• ID: 4280106
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 3838190
• End bp: 3838870
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 638136022
• Product: nucleoside-diphosphate-sugar epimerase
• Protein accession: YP_751879
• Protein GI: 114564365
• COG category: [G] Carbohydrate transport and metabolism; [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG0702] Predicted nucleoside-diphosphate-sugar epimerases

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTGCAG CAATAATAGG TGCGACGGGT TTAGTGGGGA ATACCTTACT TACTCGCATC 
ATTGAAAGTG AACATTATAG TAAAGTATTG GTTATTGGCC GTTCAGCACC TAATTTGGTC 
GAACATCAAT TTGGTGCTGA AAAAGTGCAG TTCATTTGCT GTCAACTTGA CGAAATACAT 
GAGCTGACAT TAGCAGAAAA AGTGGATCAT GCGTTTTGCT GTTTAGGCAC CACAATCAAA 
CAGGCGGGCA GTGAAGAAGC TTTTATTCAA GTCGATAAAT TAGCCGTATT GGCTTTTGCT 
AAACTGATCC AAGCTCAAGC AAATCCTTCT CTTAAATTTA TGGTGGTGAC TGCATTAGGT 
GCGGATGCTA AATCAACGGT GTTTTATAAC CGGATCAAAG GCGAAGTAGA GCTATCACTT 
AAGGCGCTAT CGTTACCGGT ACTTAATATT TTTCAACCGA GTTTATTATT AGGACCACGA 
GATAATGGCC GTTTTATGGA AGATATTGGT CAAACCCTTT TTGGTGGTTT ATCGTTTCTA 
TTTATCGGTC CGCTACGAAA ATATCAGCCC ATTAACGCAC AAACGGTAGC GGAGTCGATG 
TACCAAGTGG CTTTGAAGCC TCAGGTTGCT CCCACGCATC AAATTATCAC TAATGCCATG 
ATGCATCGCT GTCATTATTA A 

 

Protein sequence

MIAAIIGATG LVGNTLLTRI IESEHYSKVL VIGRSAPNLV EHQFGAEKVQ FICCQLDEIH 
ELTLAEKVDH AFCCLGTTIK QAGSEEAFIQ VDKLAVLAFA KLIQAQANPS LKFMVVTALG 
ADAKSTVFYN RIKGEVELSL KALSLPVLNI FQPSLLLGPR DNGRFMEDIG QTLFGGLSFL 
FIGPLRKYQP INAQTVAESM YQVALKPQVA PTHQIITNAM MHRCHY