| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3196 |
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| Symbol | |
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| ID | 4280098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3829799 |
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| End bp | 3830815 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638136014 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_751871 |
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| Protein GI | 114564357 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCACAGC AGGACATCAT TACTCAATTA CAGCTTGAAC TAGAGCAGCA TAAGCAGACA
ATCAAGCAAC TAGAGAATGA GAACAATCGA CTTACTCTAT TAAATAAACG AGTAAACGAG
CAACTCAACG CTACGCTTGA TGGCACTGGT TTATGTCTAT GGGAACAACA TATTCCCACC
GGGAACCTGA CTATTTTTAA TCAGCAGTGG GGCCATCTGC TCGGGTTTAC TCGTGAAGAG
TTACCTGCTC ATATCAGCAG CTGGAAAAAC AATCTACACC CGGAAGACAA AGACTGGGTG
ATACAAGCCT TTGAAAGCCA TGTAGCCGGT AACGCTGAAA TTTATCAAGC CGTGCATCGC
ATGGTGCACA AAGATGGCAC TGTTGCATGG GTGTCTGACC GTGGGCGTAT TATTGAATAT
GGTATTAACG GTGAACCGCT TCGTATTATG GGCACTCATA TTGATGTCAC TCAAGAAAAG
CGCTACGAAC AAGATTTAGC CAAACTCGCT CATCGTGATC CGTTAACTAA TTTACTCAAT
CGAAATGCAC TCATTGCTGC CTTTGAACAA GGAAAAAGCA CTCACAGTAC ACATCAAGGC
GCGCTGTGCT TTATCGATTT GGACGGTTTT AAGATAATTA ATGACCACTT AGGCCATCGA
TATGGCGATA GTTTATTAAT CCATATTGCC AACGATATAG CTCAAATATG CGATCAACTC
TTTAGTACGC CAGACACAAC ACAAACCCCA CTACATCATG TGGCACGTTT TGGTGGTGAT
GAGTTTGTCA TTTTAGCCCA TTGTAATGAT GTGGAACGAC TAACAACCTT GGCTAAAACC
TTACTGTCGC ACTATCAACA CCCTATCGAA TTAGAGGGTG AAAGCATTAA AGTAGGCCTC
AGTATTGGGA TCAGTTTATT TGATGAATTA GATGAGTTTA CCAATGTTTG CGAGCAAGCA
GATAAAGCCA TGTACAGCAT TAAAAAACAC GGTAAACATA ACTTCTTATT TTGGTAA
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| Protein sequence | MAQQDIITQL QLELEQHKQT IKQLENENNR LTLLNKRVNE QLNATLDGTG LCLWEQHIPT
GNLTIFNQQW GHLLGFTREE LPAHISSWKN NLHPEDKDWV IQAFESHVAG NAEIYQAVHR
MVHKDGTVAW VSDRGRIIEY GINGEPLRIM GTHIDVTQEK RYEQDLAKLA HRDPLTNLLN
RNALIAAFEQ GKSTHSTHQG ALCFIDLDGF KIINDHLGHR YGDSLLIHIA NDIAQICDQL
FSTPDTTQTP LHHVARFGGD EFVILAHCND VERLTTLAKT LLSHYQHPIE LEGESIKVGL
SIGISLFDEL DEFTNVCEQA DKAMYSIKKH GKHNFLFW
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