Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_3171 |
Symbol | |
ID | 4280073 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3796793 |
End bp | 3799072 |
Gene Length | 2280 bp |
Protein Length | 759 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638135989 |
Product | TonB-dependent receptor |
Protein accession | YP_751846 |
Protein GI | 114564332 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0174506 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAGA ATACTATTAA AATGAGCTGT ATTGCTTTAG CCATTTCGTC AGTGTTAAGC GCGCAGTATG CCGTTGCCGC AGAAGAACAA AATAACAGCG GCGACAAACA ACCTGTATTA GAGCGCATTG AAGTGACTGC TCGTAAAACA GTCGAAAGCT TGCAAAATGT GCCTGTGGCA GTGACATCAG TTAGTGCTAC AGAGTTGGCA GAAAACGGCA TCAGCGTGAT GACTGAAATT CAGCAGTTTT CGCCCAATAC CACATTGCAA TCTAGCCGAG GCACAAACTC TACGCTTACC GCTTTTATTC GTGGCGTGGG TCAAGAAGAT CCCCTTTGGG GCTACGAGCC TGGTGTCGGT ATTTACATTG ATGATGTCTA TATTGCCCGT CCGCAAGGTG CGGTGTTAGA CATTCTTGAT GTACAACGTA TTGAAGTACT TCGTGGACCA CAAGGCACGT TATACGGCAA AAACACTATT GGTGGCGCAA TTAAGTATGT AACCAAAAAA ATGTCTGGTG ATGGAGAATT AAGCCTTAAA GGTACCGTCG GCAGTTATGG CCAAAAGGAT GCCAAAATTG CAGGGCAGTT ACCCATTGTT GATGACAAGC TCTATGTCGG TTTTGCCTTT GCGAGTTTAA ACCGTGACGG TTTTGGTGAA TTTAAAACCT CGGCATTAGA TGGTCAAGAT ACCGAAAACT ATAACAAAGA TGTGATGGCG GGCCGTTTAA GTGTTGAATA TACACCGACT GACGATCTGT TTATGCGTTT TACGTATGAT AAAACCCAAG ATGACTCCAA CTCAAAAGGC GGCTATCGCC TACTTCCTAG CTTATTAACT GATGCACCAG TACCCGATAG CAAATATGAC TCCTACACCA GTATGCCTAC ATGGAACAAA GTCGAAACAG AAGGGTGGAG CGCGACGGTC GAATACAACC TCAATGAAAA CTGGAGCGTA AAGTCGGTCA CTGCCAAGCG TGAAGGCGAG TCACTGACTA ACATCGACTT TGATAATACC AGCTTACGTA TTTTCGATGT GCCAGCTATC TACGAAGATG AGCAATTTAG CCAAGAGTTT CAAGTGAACT ATGTGGGTGA TAATCTCAAC TTAGTGTCGG GGATTTACTA TTTTGACGGT GATTCTTGTG GTGTTTTCGA TGCTATTTTA GAAGAAGCCT TTAAAGCATA TGGTGGGCTA ACCCGTGAGG TGAGTGGCTG TAATAATAGC GAAAGCTATG CCGCTTATGT GCAAGGTTCA TACGATTTCA CTGAAAAGCT ATCGATGACA TTAGGTGGCC GTTACACCCG CGAATCTAAA GAAGCCACGG TTTATAATGG CGTGATATTC GATAGCATTT ATCCAGAAAC TGACTGGTAT CCTGGGTTTG TACGCGATGA CGCATTAATT GAATCTCAAA TACCTAAAGT GCTCGATGAT GAAGAAACAT GGTCTAAATT CAATCCGCGG ATCGGTTTAG AATACCAAGT AAATGAAGAC ATGATGGTGT TTACCAGCTA CTCACAGGGG TTCAAGTCGG GTACGTTTAA CCCAAGGGCG ACAGGTGCTG AACCCGCGGT TGATCCTGAA ACGGTTAACT CATATGAAAT TGGCATGAAG AGCGAATGGA ACGATAATCT TCGTGTTAAT GCCACGCTAT TTTACCTTGA TCATAAAGAC CGACAGTTTG TCACAGTGCT ACCCGGCGAG GACAGTTCAG ACCTTAATCA GCGTTTAGGA AACATCGGTA AATCTACCGC GACAGGCCTA GAGCTTGAAG TTGAATACGC TGCGACAGAC TCACTCAACT TATTTGCTAA TGTCGGCTTA ATTGACGCCA CTTTTGACGA AGTGATTTCA TATGACGACC TCGGGACTAA AATCGATATT AGTGATACAT ACACCATTAC TAATACTCCA GACACCACGG CAAACCTAGG GTTTAGTTAC AGTATTGAAG CCGACGTTGG CAGCTTTATC ATTAATGGTA ATTACTATTA CCGTAGCGAT TATGACCTCG CTGTAGTAGA CAACCTATTG AGCCAAGATG GCTATGGCTT GCTCAACTTT GGCGTGAATT GGTATAGCAA TGATGGCCAT TGGAATGCTG GATTACATTG GAAAAACGTC ACCGATGAAG AGTATTTAGT GGGTAACTAT GCCTTTGTCA CGCCAACAGG CAATGGTGAC TTTACACCAG GGCTAGGCGG CGATAACACC CTAATTGGAT ATTATGGCGA CCCAGAGACC ATTTCATTAA CGGTTGGCTA TGTCTTCTAA
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Protein sequence | MKQNTIKMSC IALAISSVLS AQYAVAAEEQ NNSGDKQPVL ERIEVTARKT VESLQNVPVA VTSVSATELA ENGISVMTEI QQFSPNTTLQ SSRGTNSTLT AFIRGVGQED PLWGYEPGVG IYIDDVYIAR PQGAVLDILD VQRIEVLRGP QGTLYGKNTI GGAIKYVTKK MSGDGELSLK GTVGSYGQKD AKIAGQLPIV DDKLYVGFAF ASLNRDGFGE FKTSALDGQD TENYNKDVMA GRLSVEYTPT DDLFMRFTYD KTQDDSNSKG GYRLLPSLLT DAPVPDSKYD SYTSMPTWNK VETEGWSATV EYNLNENWSV KSVTAKREGE SLTNIDFDNT SLRIFDVPAI YEDEQFSQEF QVNYVGDNLN LVSGIYYFDG DSCGVFDAIL EEAFKAYGGL TREVSGCNNS ESYAAYVQGS YDFTEKLSMT LGGRYTRESK EATVYNGVIF DSIYPETDWY PGFVRDDALI ESQIPKVLDD EETWSKFNPR IGLEYQVNED MMVFTSYSQG FKSGTFNPRA TGAEPAVDPE TVNSYEIGMK SEWNDNLRVN ATLFYLDHKD RQFVTVLPGE DSSDLNQRLG NIGKSTATGL ELEVEYAATD SLNLFANVGL IDATFDEVIS YDDLGTKIDI SDTYTITNTP DTTANLGFSY SIEADVGSFI INGNYYYRSD YDLAVVDNLL SQDGYGLLNF GVNWYSNDGH WNAGLHWKNV TDEEYLVGNY AFVTPTGNGD FTPGLGGDNT LIGYYGDPET ISLTVGYVF
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