Gene Sfri_3171 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3171 
Symbol 
ID4280073 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3796793 
End bp3799072 
Gene Length2280 bp 
Protein Length759 aa 
Translation table11 
GC content44% 
IMG OID638135989 
ProductTonB-dependent receptor 
Protein accessionYP_751846 
Protein GI114564332 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0174506 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACAGA ATACTATTAA AATGAGCTGT ATTGCTTTAG CCATTTCGTC AGTGTTAAGC 
GCGCAGTATG CCGTTGCCGC AGAAGAACAA AATAACAGCG GCGACAAACA ACCTGTATTA
GAGCGCATTG AAGTGACTGC TCGTAAAACA GTCGAAAGCT TGCAAAATGT GCCTGTGGCA
GTGACATCAG TTAGTGCTAC AGAGTTGGCA GAAAACGGCA TCAGCGTGAT GACTGAAATT
CAGCAGTTTT CGCCCAATAC CACATTGCAA TCTAGCCGAG GCACAAACTC TACGCTTACC
GCTTTTATTC GTGGCGTGGG TCAAGAAGAT CCCCTTTGGG GCTACGAGCC TGGTGTCGGT
ATTTACATTG ATGATGTCTA TATTGCCCGT CCGCAAGGTG CGGTGTTAGA CATTCTTGAT
GTACAACGTA TTGAAGTACT TCGTGGACCA CAAGGCACGT TATACGGCAA AAACACTATT
GGTGGCGCAA TTAAGTATGT AACCAAAAAA ATGTCTGGTG ATGGAGAATT AAGCCTTAAA
GGTACCGTCG GCAGTTATGG CCAAAAGGAT GCCAAAATTG CAGGGCAGTT ACCCATTGTT
GATGACAAGC TCTATGTCGG TTTTGCCTTT GCGAGTTTAA ACCGTGACGG TTTTGGTGAA
TTTAAAACCT CGGCATTAGA TGGTCAAGAT ACCGAAAACT ATAACAAAGA TGTGATGGCG
GGCCGTTTAA GTGTTGAATA TACACCGACT GACGATCTGT TTATGCGTTT TACGTATGAT
AAAACCCAAG ATGACTCCAA CTCAAAAGGC GGCTATCGCC TACTTCCTAG CTTATTAACT
GATGCACCAG TACCCGATAG CAAATATGAC TCCTACACCA GTATGCCTAC ATGGAACAAA
GTCGAAACAG AAGGGTGGAG CGCGACGGTC GAATACAACC TCAATGAAAA CTGGAGCGTA
AAGTCGGTCA CTGCCAAGCG TGAAGGCGAG TCACTGACTA ACATCGACTT TGATAATACC
AGCTTACGTA TTTTCGATGT GCCAGCTATC TACGAAGATG AGCAATTTAG CCAAGAGTTT
CAAGTGAACT ATGTGGGTGA TAATCTCAAC TTAGTGTCGG GGATTTACTA TTTTGACGGT
GATTCTTGTG GTGTTTTCGA TGCTATTTTA GAAGAAGCCT TTAAAGCATA TGGTGGGCTA
ACCCGTGAGG TGAGTGGCTG TAATAATAGC GAAAGCTATG CCGCTTATGT GCAAGGTTCA
TACGATTTCA CTGAAAAGCT ATCGATGACA TTAGGTGGCC GTTACACCCG CGAATCTAAA
GAAGCCACGG TTTATAATGG CGTGATATTC GATAGCATTT ATCCAGAAAC TGACTGGTAT
CCTGGGTTTG TACGCGATGA CGCATTAATT GAATCTCAAA TACCTAAAGT GCTCGATGAT
GAAGAAACAT GGTCTAAATT CAATCCGCGG ATCGGTTTAG AATACCAAGT AAATGAAGAC
ATGATGGTGT TTACCAGCTA CTCACAGGGG TTCAAGTCGG GTACGTTTAA CCCAAGGGCG
ACAGGTGCTG AACCCGCGGT TGATCCTGAA ACGGTTAACT CATATGAAAT TGGCATGAAG
AGCGAATGGA ACGATAATCT TCGTGTTAAT GCCACGCTAT TTTACCTTGA TCATAAAGAC
CGACAGTTTG TCACAGTGCT ACCCGGCGAG GACAGTTCAG ACCTTAATCA GCGTTTAGGA
AACATCGGTA AATCTACCGC GACAGGCCTA GAGCTTGAAG TTGAATACGC TGCGACAGAC
TCACTCAACT TATTTGCTAA TGTCGGCTTA ATTGACGCCA CTTTTGACGA AGTGATTTCA
TATGACGACC TCGGGACTAA AATCGATATT AGTGATACAT ACACCATTAC TAATACTCCA
GACACCACGG CAAACCTAGG GTTTAGTTAC AGTATTGAAG CCGACGTTGG CAGCTTTATC
ATTAATGGTA ATTACTATTA CCGTAGCGAT TATGACCTCG CTGTAGTAGA CAACCTATTG
AGCCAAGATG GCTATGGCTT GCTCAACTTT GGCGTGAATT GGTATAGCAA TGATGGCCAT
TGGAATGCTG GATTACATTG GAAAAACGTC ACCGATGAAG AGTATTTAGT GGGTAACTAT
GCCTTTGTCA CGCCAACAGG CAATGGTGAC TTTACACCAG GGCTAGGCGG CGATAACACC
CTAATTGGAT ATTATGGCGA CCCAGAGACC ATTTCATTAA CGGTTGGCTA TGTCTTCTAA
 
Protein sequence
MKQNTIKMSC IALAISSVLS AQYAVAAEEQ NNSGDKQPVL ERIEVTARKT VESLQNVPVA 
VTSVSATELA ENGISVMTEI QQFSPNTTLQ SSRGTNSTLT AFIRGVGQED PLWGYEPGVG
IYIDDVYIAR PQGAVLDILD VQRIEVLRGP QGTLYGKNTI GGAIKYVTKK MSGDGELSLK
GTVGSYGQKD AKIAGQLPIV DDKLYVGFAF ASLNRDGFGE FKTSALDGQD TENYNKDVMA
GRLSVEYTPT DDLFMRFTYD KTQDDSNSKG GYRLLPSLLT DAPVPDSKYD SYTSMPTWNK
VETEGWSATV EYNLNENWSV KSVTAKREGE SLTNIDFDNT SLRIFDVPAI YEDEQFSQEF
QVNYVGDNLN LVSGIYYFDG DSCGVFDAIL EEAFKAYGGL TREVSGCNNS ESYAAYVQGS
YDFTEKLSMT LGGRYTRESK EATVYNGVIF DSIYPETDWY PGFVRDDALI ESQIPKVLDD
EETWSKFNPR IGLEYQVNED MMVFTSYSQG FKSGTFNPRA TGAEPAVDPE TVNSYEIGMK
SEWNDNLRVN ATLFYLDHKD RQFVTVLPGE DSSDLNQRLG NIGKSTATGL ELEVEYAATD
SLNLFANVGL IDATFDEVIS YDDLGTKIDI SDTYTITNTP DTTANLGFSY SIEADVGSFI
INGNYYYRSD YDLAVVDNLL SQDGYGLLNF GVNWYSNDGH WNAGLHWKNV TDEEYLVGNY
AFVTPTGNGD FTPGLGGDNT LIGYYGDPET ISLTVGYVF