| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3149 |
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| Symbol | |
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| ID | 4280051 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3767594 |
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| End bp | 3770482 |
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| Gene Length | 2889 bp |
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| Protein Length | 962 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638135967 |
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| Product | glycine dehydrogenase |
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| Protein accession | YP_751824 |
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| Protein GI | 114564310 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0403] Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain
[COG1003] Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain |
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| TIGRFAM ID | [TIGR00461] glycine dehydrogenase (decarboxylating) |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.333278 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAAGC AAACCCTGAC ACAACTAGAA CAACACGAGT TATTTCTAAC CCGCCACATT
GGCCCCAATG CTGAGCAGCA ACAAGAAATG CTCAACTTCA TTGGTGCAGA GTCGTTAGAA
GACTTAACCG CGCAAACCGT TCCTGGCAAA ATTCGTTTAC CACAAGACCT CACCATCGGT
GACTCGTGTG GCGAAGCCGA AGGTATTGCC TATATCCGCA ACATAGCTGA CAAAAACAAA
GTCTTTAAAA GCTATATCGG TATGGGTTAC TACGGCGTGC AAGTGCCAAA TGTTATTTTG
CGTAACGTGT TCGAAAATCC AGGTTGGTAC ACTGCTTATA CTCCATATCA GCCAGAAATC
GCTCAAGGCC GTTTAGAAGC AATCTTAAAC TTCCAACAAG TGTCAATGGA CCTAACCGGC
CTTGACCTTG CGTCAGCCTC ATTGCTGGAC GAAGCAACCG CAGCGGCAGA AGCCATGGCC
CTTGCCAAGC GCGTGTCTAA AGCTAAAAAA GCCAACATCT TCTTTGTTGC CGATGACGTA
TTCCCACAAA CATTAGACGT AGTGAAAACC CGCGCAGAAT GTTTTGGTTT TGAAGTGGTC
GTTGGCCCAG CGAGTGAAGC GGTAAATTAC GAATTATTTG GTGCCTTGTT CCAGTACACC
AACCGTATTG GCCAAATTAC CGATTACACT GAGCTATTTG CTACGCTTCG TGACAACAAA
GTTATTGTTA CAGTAGCAGC CGACATCATG TCGTTAATGT TACTTAAATC ACCGGGCGCG
ATGGGTGCAG ATGTAGTATT TGGTAGCGCG CAACGTTTTG GCGTACCAAT GGGATACGGC
GGACCACACG CAGCATTCTT CGTTGCCCGT GACGAACATA AACGTTCAAT GCCAGGCCGT
ATTATTGGTG TGTCAAAAGA CACCCGCGGC AACAGCGCAT TACGTATGGC CATGCAAACG
CGCGAGCAAC ATATTCGCCG CGAAAAAGCC AACTCAAACA TTTGTACCGC GCAAATTTTA
TTAGCCAACA TGGCGTCGTT TTATGCGGTA TTCCACGGCC CACAAGGCTT AAAAACCATA
GCATCACGCA TTAACCGTTT AGCCGACATA TTAGCGGCAG GCTTAACAGC AAAAGGCTTA
ACCTTAGCTA ACACCACTTG GTTCGACACC ATCAGTGTTA AAGGTGCCGA CGTTGCCGCC
ATTAATGCCC GCGCCATAGC AGCGCAAGTT AACTTACGTA TAGATGCAGA CGGCGTGTTT
GGTATCAGCT TAGATGAAAC CACTATCCGT ACAGATATCG CAGACTTATT TGACGTTATC
CTAGGCGCAG GCCACGGTTT AGATGTTGCC ACGTTTGATG CCGACATCGT TGCTAATGGC
AGCCAGTCAA TTCCAGACGC GCTAGTACGT CAAGATGCGG TATTAACTCA TCCAACGTTT
AATCGCTACC AAAGCGAAAC CGAGATGATG CGTTATATCA AGCGTCTCGA AAACAAAGAT
TTAGCCTTAA ACCACTCAAT GATCTCGTTA GGTTCATGCA CCATGAAACT CAACGCAGCA
GTGGAAATGC TACCAGTAAG CTGGCCAGAA TTTGCTAACA TGCACCCATT CTGCCCGCTA
GATCAGGCAC AAGGTTACAC CCAGTTAATT AACGAACTGT CTGAGTTTTT AGTTAAAATC
ACCGGTTACG ACTCTGTGTG TATTCAGCCA AACTCAGGTG CGCAAGGCGA GTACGCTGGC
TTATTAGCGA TTAAGAAATA CCACGAGTCT CGCGGCGACG CGCACCGTAA CATTTGCTTA
ATCCCACAAT CAGCTCACGG TACCAACCCT GCATCGGCAC AACTTGCTGG TATGAAGGTA
GTGGTTACAG CTTGCGACAA GCAAGGTAAC GTTGATTTAG AAGACTTACG CACTAAAGCA
GCGGAGCTTG CAGACAGCCT ATCGTGCATC ATGATCACGT ACCCATCGAC TCACGGTGTT
TACGAAGAAT CAATCCGCGA AGTATGCGAA ATCGTCCATC AATATGGCGG TCAAGTGTAC
CTAGACGGCG CAAATATGAA CGCACAGGTT GGTTTAACAT CACCAGGCTT TATCGGCGCA
GACGTATCGC ACCTTAACTT ACACAAAACC TTTGCTATCC CGCACGGTGG CGGTGGTCCT
GGTATGGGCC CAATCGGTGT TAAATCACAC CTTGCGCCAT TTGTAGCAGG CCACACAGTG
ATTAAGCCAG GCCGCGAAAG CGACCATAAC GGCGCGGTAT CTGCTGCACC TTATGGTAGC
GCCAGCATTT TGCCAATCAG CTGGATGTAC ATTAAGTTGT TGGGCACTAA AGGGGTTAAG
CAATCAACCC AAACTGCGCT ATTAAACGCT AACTACATCA TGAAAAAGCT GTCAGCACAT
TATCCTGTGT TGTTCACCGG CCGTAACGAC CGTGTTGCTC ATGAATGTAT TATCGATTTG
CGTCCATTAA AAGAAACCTC AGGCGTGACC GAAATGGATA TCGCTAAGCG TCTAAACGAC
TATGGTTTCC ACTCACCAAC CATGAGCTTC CCAGTAGCGG GAACCTTGAT GATTGAGCCA
ACAGAATCTG AGTCTAAGGT TGAGCTGGAC CGTTTCATCG AAGCGATGAT TTCTATTCGC
GGTGAAATTA CCAAGGTAGA AGCAGGCGAG TGGCCAGTGG ACAATAATCC ACTGCATAAC
GCACCTCACA CCCTAGCGGA TATTATGGAC CCAGAATTTG ATTCACGTCC GTACAGTCGT
GAAGTGGCCG TGTTCCCAAC GGCTGCGGTT AAGGCGAATA AGTTTTGGCC AACGGTAAAC
CGTATTGATG ATGTATATGG GGATCGAAAT CTTATGTGTT CGTGTGTTCC TTTAAGTGAT
TATGAGTAA
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| Protein sequence | MTKQTLTQLE QHELFLTRHI GPNAEQQQEM LNFIGAESLE DLTAQTVPGK IRLPQDLTIG
DSCGEAEGIA YIRNIADKNK VFKSYIGMGY YGVQVPNVIL RNVFENPGWY TAYTPYQPEI
AQGRLEAILN FQQVSMDLTG LDLASASLLD EATAAAEAMA LAKRVSKAKK ANIFFVADDV
FPQTLDVVKT RAECFGFEVV VGPASEAVNY ELFGALFQYT NRIGQITDYT ELFATLRDNK
VIVTVAADIM SLMLLKSPGA MGADVVFGSA QRFGVPMGYG GPHAAFFVAR DEHKRSMPGR
IIGVSKDTRG NSALRMAMQT REQHIRREKA NSNICTAQIL LANMASFYAV FHGPQGLKTI
ASRINRLADI LAAGLTAKGL TLANTTWFDT ISVKGADVAA INARAIAAQV NLRIDADGVF
GISLDETTIR TDIADLFDVI LGAGHGLDVA TFDADIVANG SQSIPDALVR QDAVLTHPTF
NRYQSETEMM RYIKRLENKD LALNHSMISL GSCTMKLNAA VEMLPVSWPE FANMHPFCPL
DQAQGYTQLI NELSEFLVKI TGYDSVCIQP NSGAQGEYAG LLAIKKYHES RGDAHRNICL
IPQSAHGTNP ASAQLAGMKV VVTACDKQGN VDLEDLRTKA AELADSLSCI MITYPSTHGV
YEESIREVCE IVHQYGGQVY LDGANMNAQV GLTSPGFIGA DVSHLNLHKT FAIPHGGGGP
GMGPIGVKSH LAPFVAGHTV IKPGRESDHN GAVSAAPYGS ASILPISWMY IKLLGTKGVK
QSTQTALLNA NYIMKKLSAH YPVLFTGRND RVAHECIIDL RPLKETSGVT EMDIAKRLND
YGFHSPTMSF PVAGTLMIEP TESESKVELD RFIEAMISIR GEITKVEAGE WPVDNNPLHN
APHTLADIMD PEFDSRPYSR EVAVFPTAAV KANKFWPTVN RIDDVYGDRN LMCSCVPLSD
YE
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