| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3122 |
|---|
| Symbol | |
|---|
| ID | 4280025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3734625 |
|---|
| End bp | 3736898 |
|---|
| Gene Length | 2274 bp |
|---|
| Protein Length | 757 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638135941 |
|---|
| Product | catalase/peroxidase HPI |
|---|
| Protein accession | YP_751798 |
|---|
| Protein GI | 114564284 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0376] Catalase (peroxidase I) |
|---|
| TIGRFAM ID | [TIGR00198] catalase/peroxidase HPI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACATC CATTATTTAA TCAAAAAGTA CTCGCGGGTT TTGTCAGCAT GCTGCTTATA
TCCGGCTCTG CTTTCGCCAG CAATAACGAA AAGTCAGAAA TGACCAAGCC CAAAGGAGCT
GTTGGAACTG GTGTAGCATT AGAAAACCAA GCAAGAACGA ATCAATTTTG GTGGCCTGAT
CAACTTAATC TATCTGCGCT GCGTGACCAC GATAAGCGCT CTAATCCTTA TGGCGAAAAC
TTTGACTACG CCAAGGCATT TAACAGCCTA GATCTTGATA AAGTCAAACT AGACATTAAT
GCGTTACTGA CCACATCTCA AGATTGGTGG CCGTCAGATT ATAGCAACTA TGGCCCCTTT
TTTATCCGTA TGACATGGCA CAGTGCAGGT ACCTATCGCA CCCTTGATGG CCGAGGGGGC
GCTGGTGGTG GCCAACAACG TTTTGAACCA CTCAACAGCT GGCCTGATAA TGCGAGTTTA
GACAAAGCGC GACGTTTGCT CTGGCCAATC AAAATGAAGT ATGGAGAAGC CATTTCTTGG
TCTGATTTGA TTGTGTTAGC GGGTAATGTA TCGCTTGAAA ATATGGGCTT TAAAACCTAC
GGTTTTGCCG GTGGACGTCA TGATGATTGG GAACCAGACA TGGTGTACTG GGGACCAGAA
ATTGAAATGC TTGCTAGCGA CAGAGAAGAT AACGGCGGCA AGTTACAACG TCCGCTTGGT
GCCACTCACA TGGGCTTAAT ATACGTAAAC CCAGAGGGGC CAAAAGGCGT ACCAGACCCA
TTGGGCTCAG CCAAAAATAT TCGTGTAGCC TTTGAACGTA TGGCGATGAA CGATGAAGAA
ACACTAGCCC TAATTGCGGG TGGACACACA TTTGGTAAAA TGCACGGTGC GCACAAGCCT
AAAGATTGTC TAGGCGCTGA ACCTGCTGCA GCGGGTATCG AAGAGCAAGG CCTTGGCTGG
AAAAACAAAT GCGGTAAAGG ACACTCTGAA GACACTATCA CCAGTGGTTT AGAAGGTGCT
TGGACTCAAG CACCAACAAA ATGGACCTCT TTATATCTAA GTAATTTACT TACCTTCGAG
TGGAAACAAA CTCGAAGCCC TGCTGGCGCT ATCCAATGGA TTCCTACAGA CGAGTCGTTG
CATAAAGCGG TTCCTGATGC GCATGTTAAA GGCAAGTTTC ACGCTCCTGT CATGACAACA
GCAGACTTAG CATTAAAGTA TGATCCTGAG TATCGAAAAA TTGCTGAACG CTTTTTAGCT
GATCCAGAAG AATACCGCTT AGCTTTCGCT AAAGCTTGGT ACAAACTGAC CCATAGAGAT
ATGGGCCCAT CACGTAATTT CTTAGGCAAA GAAGTCCCTA AAGAAAGTCT AATTTGGCAA
GATCCTATAG ATGATAAAAC ACAATCAAAT ATAGATGCTG ATGGCGTGCA AGAACTTAAA
GCACAAATTC TAAAGTCTAA CCTAACCGTG TCAGAGTTAG TGCGTGTGGC TTGGGCATCT
GCGGCAAGTT ACCGTCATTC AGACATGCGC GGTGGTGCAA ACGGTGCACG TATTGCATTA
TCACCTCAAA AAGACTGGTC GGTAAATAAT CCGGCTGAAA CCGCTAAAGT GATTAAAACA
CTAAAAGCGA TTCAAGAGGA CTACAACGAC AGCTTGTTTA GTAAAAGCAA AGTATCACTG
GCCGACTTAA TCGTTCTAGG GGGCACTGCT GCAATAGAAA AGGCCGCTAA AGATGCAGGT
TTTACTGTAT CAGTGCCATT TAATGCTGGT CGTGGTGATG CCACACAAGC AATGACCGAT
ATCAATGCCT TTAGTTTACT TGAGCTAACA TCTGATGGTT TTAGAAATTA CTTTGACGCA
CAGCAAAGCT ACAAGTCGCC TGTGGACATG TTAGTTGATA AAGCAGACCA ACTTAACCTA
TCGGTGCCAG AAATGACCGT TTTAGTGGGT GGATTACGCG CACTTGACGC TAACTACAAA
GGGCTAAAAC ACGGAGTACT CACAAGCACT CCAGGCACCT TAAACAATGA CTTTTTCGTC
AATTTACTCG ACATGTCTAC GGTTTGGAAA AAATCGTCTA CCGATGGTAT TTATGAGGGA
TTTGATCGTC AGTCAGGTCA CAAAAAATGG ACAGCCACCT CAGTCGATTT AGTCTTTGGT
TCAAACTCAG AGCTTCGTGC AGTATCTGAG GTGTATGCGT TTGATACATC GAAGCAAAAA
TTTGTCGAAG ACTTTGCAGC AGCCTGGACT AAAGTAATGA ACCTAGACCG TTAA
|
|---|
| Protein sequence | MKHPLFNQKV LAGFVSMLLI SGSAFASNNE KSEMTKPKGA VGTGVALENQ ARTNQFWWPD
QLNLSALRDH DKRSNPYGEN FDYAKAFNSL DLDKVKLDIN ALLTTSQDWW PSDYSNYGPF
FIRMTWHSAG TYRTLDGRGG AGGGQQRFEP LNSWPDNASL DKARRLLWPI KMKYGEAISW
SDLIVLAGNV SLENMGFKTY GFAGGRHDDW EPDMVYWGPE IEMLASDRED NGGKLQRPLG
ATHMGLIYVN PEGPKGVPDP LGSAKNIRVA FERMAMNDEE TLALIAGGHT FGKMHGAHKP
KDCLGAEPAA AGIEEQGLGW KNKCGKGHSE DTITSGLEGA WTQAPTKWTS LYLSNLLTFE
WKQTRSPAGA IQWIPTDESL HKAVPDAHVK GKFHAPVMTT ADLALKYDPE YRKIAERFLA
DPEEYRLAFA KAWYKLTHRD MGPSRNFLGK EVPKESLIWQ DPIDDKTQSN IDADGVQELK
AQILKSNLTV SELVRVAWAS AASYRHSDMR GGANGARIAL SPQKDWSVNN PAETAKVIKT
LKAIQEDYND SLFSKSKVSL ADLIVLGGTA AIEKAAKDAG FTVSVPFNAG RGDATQAMTD
INAFSLLELT SDGFRNYFDA QQSYKSPVDM LVDKADQLNL SVPEMTVLVG GLRALDANYK
GLKHGVLTST PGTLNNDFFV NLLDMSTVWK KSSTDGIYEG FDRQSGHKKW TATSVDLVFG
SNSELRAVSE VYAFDTSKQK FVEDFAAAWT KVMNLDR
|
|---|
| |