| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3097 |
|---|
| Symbol | |
|---|
| ID | 4280000 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3703662 |
|---|
| End bp | 3705260 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638135916 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_751773 |
|---|
| Protein GI | 114564259 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTATG ATGCAGATTC AGTACTTGAT TTACACCAAT ACACATCCAT AGTTGATTTG
ATCGAAAAAG CCTGTGACAA GTATGCTGAT AATGTTGCAT ATGCATGTCT TGGGAAAAGC
ACTACCTTTC GCGAAATAGA ACAAGGCTCG CGCGATTTTG CCAGTTATTT GCAACATAGC
ACTTCATTGC AACCAGGCGA CAGAGTAGCG ATACAATTGC CTAATATTAC TCAGTTTGTG
ATTGCGGCTT ATGGGGTAAT TCGAGCAGGT ATGGTGCTAG TCAATACCAA TCCGATGTAC
ACGGAACGTG AACTTATTCA TCAATTTAAC GACTCAGGTG CAAAAGCCTT AGTCGTATTG
TCGGATTTAC TACCTACATT AACTAACGTG ATCGACAAAA CAACAGTAGA GCTGGTGATT
TCGACCCACG CAATGGATCT TATCCAACCG CAACCTCAGC CTGAAACCCC TTTTAATAAA
GTGGCATTTA CCTCTGTGCT CACTGAAGGT GCTAAGCATC CTTATCAAGC GATAAAACCT
AACCATGATG ATTTAATTGC TCTGCAATAC ACCGGCGGCA CAACCGGTTT ATCGAAAGGC
GCTATGCTCA ATCATGGCAA CCTTTTGGCT AATTCTGGTC AAGTAAAATC ACGAATTGCT
AGCACCATGA CCGAAGGGCA TGATGTGTTT GTCGCGCCAT TACCGATTTA CCATATCTAT
GCATTTATGG TTAATTTGGT GCTGTATTTT GAATCAGGTA GCTGTTCAGT ATTAATTCCC
AATCCTCGTG ATATTGCAGG GCTAATCAAT ACCATGAAAG CCTATCCATT TACTGGCTTT
GCGGGTTTAA ACACTCTATT TGTTGGCTTA TGTCATCAGC CAGAATTTAA AGCCTTAGAT
TTCAGTAAAA TGAAAATAAC CATTTCGGGT GGTACTGCAT TAACGAGTGC AGCAGCTAAC
TTATGGCAAC AAACCACCCA ATGTATGATT TCAGAAGGTT ATGGTTTGTC TGAAACATCT
CCTGTTGTCA GCCTTAATGC ACCAGGGCAT CAACGCCTCG GTACTATTGG CAAACCTGTA
TTGGGCACTG AAGTTCATGT ACTCGATATG GATGATAATG AAGTGGCTAT CGGTCAAGCT
GGCGAACTCG CAGTGCGCGG TCCGCAAGTT ATGCAAGGGT ATTGGAATAA ACCACAAGAA
ACCGCTAACG TCATGACAAA AGACGGATTC TTTAAAACTG GCGATATTGG CATTGCTAGC
GAAGATGGTT ATCACACCAT TGTTGATCGT AAAAAAGACA TGATTATTGT TTCTGGTTTT
AACGTCTATC CTAATGAAGT TGAAGACGTA CTTTCAACTA ATGAGTTAGT TTTAGAGTGT
GCTGTCGTCG GGGTTGAAGA TGAACGATCT GGCGAAGCAG TAAAAGCCGT GATTGTATTA
AAACAGCCGC CAGCGGATAT CGAGGCAGTC AAACAGGCGA TTAATGATTA CTGCCGCAGC
CAACTGACTG CGTATAAAGT GCCACGCATT ATTGAGTTTA CTGAACAGTT ACCGAAAAGT
GCTGTAGGGA AAATTTTGCG TCGAGAACTA CGTAAATAA
|
|---|
| Protein sequence | MAYDADSVLD LHQYTSIVDL IEKACDKYAD NVAYACLGKS TTFREIEQGS RDFASYLQHS
TSLQPGDRVA IQLPNITQFV IAAYGVIRAG MVLVNTNPMY TERELIHQFN DSGAKALVVL
SDLLPTLTNV IDKTTVELVI STHAMDLIQP QPQPETPFNK VAFTSVLTEG AKHPYQAIKP
NHDDLIALQY TGGTTGLSKG AMLNHGNLLA NSGQVKSRIA STMTEGHDVF VAPLPIYHIY
AFMVNLVLYF ESGSCSVLIP NPRDIAGLIN TMKAYPFTGF AGLNTLFVGL CHQPEFKALD
FSKMKITISG GTALTSAAAN LWQQTTQCMI SEGYGLSETS PVVSLNAPGH QRLGTIGKPV
LGTEVHVLDM DDNEVAIGQA GELAVRGPQV MQGYWNKPQE TANVMTKDGF FKTGDIGIAS
EDGYHTIVDR KKDMIIVSGF NVYPNEVEDV LSTNELVLEC AVVGVEDERS GEAVKAVIVL
KQPPADIEAV KQAINDYCRS QLTAYKVPRI IEFTEQLPKS AVGKILRREL RK
|
|---|
| |