| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3078 |
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| Symbol | pdxA |
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| ID | 4279981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3685976 |
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| End bp | 3686959 |
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| Gene Length | 984 bp |
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| Protein Length | 327 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638135897 |
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| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
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| Protein accession | YP_751754 |
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| Protein GI | 114564240 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
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| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTAAAC GTATTGCCAT CACTCCCGGC GAACCAGCTA GTATTGGTCC CGACTTAGTC
ATCAAACTCG CTCAACAGGC ATGGCCTGTT GAGTTAGTTG TTTGTGCCGA CCCCAATTTA
CTCATGACAC GAGCAAAAAT GCTTGGACTG CCTTTACAAC TCAGGCCGTA TCAACCATCG
CAACCACCGA AGCCGCAAAC AGCAGGCACA TTAACCATTG CTCCTTTTAC ATTAGCAGAA
GAAGTTGAGT GTGGCGTACT GAATGAAGCT AACAGCGCTT ATGTAGTAGA AACCTTGCGC
TACGCTGGTG AAAAAAATAT GTCGAATGAA TTCGACGCGG TTGTTACCGG TCCTGTGCAT
AAAGGCATTA TTAACCAAGC AGGTATTCCG TTTAGCGGTC ATACCGAATT TTTTGCACTA
CAAGCCAATT GTGCAGATGT CGTCATGATG CTTGCAGCCC CAGGGTTACA AGTGGCGCTA
ATGACCACAC ATATACCATT AGCTTACGTT GCAAAAGCCA TTACCCGCGA CAGACTGCAT
CACATTATTA CCATTTTGCA TCGGGAATTG GTCAGTAAAT TTGGTTTAGG TTCACCCAAA
ATTTATGTGT GTGGACTCAA TCCACATGCA GGAGAAGACG GCCATTTAGG CCGTGAAGAA
ATTGATACCA TCATACCTGC GCTCAACGAG TTACGAGAAC AAGGCATGGA TATTGTTGGC
CCGTTGCCAG CCGATACCTT ATTCCAACCT AAGTATCTTG AACAAGCTGA CGTAGTATTA
GCGATGTATC ATGACCAAGG ATTACCTGTG CTTAAATCAT TAGGTTTTGG CAAGTCGGTC
AATATCACCT TAGGTTTACC TTATATTCGC ACCTCAGTCG ATCACGGCAC CGCGCTAGAA
TTGGCCGGCA GTGGTAAAGC GGATTGCGGC AGTTTTACCT GTGCATTAAA CAAAGCCATC
GAATTGGCCT CAAAAAGTAA GTAA
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| Protein sequence | MTKRIAITPG EPASIGPDLV IKLAQQAWPV ELVVCADPNL LMTRAKMLGL PLQLRPYQPS
QPPKPQTAGT LTIAPFTLAE EVECGVLNEA NSAYVVETLR YAGEKNMSNE FDAVVTGPVH
KGIINQAGIP FSGHTEFFAL QANCADVVMM LAAPGLQVAL MTTHIPLAYV AKAITRDRLH
HIITILHREL VSKFGLGSPK IYVCGLNPHA GEDGHLGREE IDTIIPALNE LREQGMDIVG
PLPADTLFQP KYLEQADVVL AMYHDQGLPV LKSLGFGKSV NITLGLPYIR TSVDHGTALE
LAGSGKADCG SFTCALNKAI ELASKSK
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