Gene Sfri_3072 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3072 
Symbol 
ID4279975 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3678517 
End bp3679470 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content43% 
IMG OID638135891 
ProductD-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 
Protein accessionYP_751748 
Protein GI114564234 
COG category[C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only 
COG ID[COG1052] Lactate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.642476 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATAG TGGTATTAGA TGGTTATACA CTTAATCCGG GTGATTTGAG TTGGCAAGCG 
CTTGAGGCAT TAGGCGAATG TGATATTTAC GACCATACAA CACTCGACCA AATCGTCAGT
CGTTGCCAAG GTGCGCACAT CGTACTGACC AATAAAACCC TATTGAGTGC CGCGACCTTA
AAGCAACTGC CCGCATTAAC CTATATTGGT GTTCTCGCCA CTGGAACCAA TGTGGTCGAT
GTTGATGCAG CAACAGCGCA GGGCATTGTT GTCACTAATA TTCCTGCTTA TGGCCCCGAT
GCCGTAGCAC AAATGGTGTT TGCCCATATT TTACATCATA AGCAACAAGT TGCTTTACAT
GACCAAGCCG TAAAACAAGG ACAATGGGTA ACGCAACGAG ATTTTTGTTT TACCTTATCA
CCCTTAACTT CATTAAAAGG CCTCACGCTG GGTGTTGTAG GTTATGGTGA TATTGGCCAA
CAGGTTGCCA ATTTAGGTGT CGCATTTGGC ATGAAAGTGT TGATTACCAG TGCTAAACCT
AAAACCAATT TACCTGATGC CATTCAATGG TGCGAACGTG ACATCCTGCT GCAACAAGCC
GATATTATTT CGCTGCATTG TCCGCTGATT GCTGCAACCA AATACATGAT CAATAGCGAC
AGTTTACGCT TACTTAAACC GGGTTGTTTA TTAGTGAATA CCGCCCGTGG CGATTTGATT
AATGAAAATG ATCTCGCTCA ATGGCTTAAC AATGGTAACG GCTTTGCGGC AGTTGACGTG
TTATCGACAG AGCCACCCAG TAGCAATAAC CCACTACTGA GTGCAGCCAA CATTACTATC
ACGCCGCATA TTGCATGGGC GACATTACAA GCTAGACAAA ATCTGCTTAA TATTGCGGTT
GAAAATGTAC GCAAATTTCA ACAAGGTAAA ATGTTGAATC GAATTAACGA CTAA
 
Protein sequence
MKIVVLDGYT LNPGDLSWQA LEALGECDIY DHTTLDQIVS RCQGAHIVLT NKTLLSAATL 
KQLPALTYIG VLATGTNVVD VDAATAQGIV VTNIPAYGPD AVAQMVFAHI LHHKQQVALH
DQAVKQGQWV TQRDFCFTLS PLTSLKGLTL GVVGYGDIGQ QVANLGVAFG MKVLITSAKP
KTNLPDAIQW CERDILLQQA DIISLHCPLI AATKYMINSD SLRLLKPGCL LVNTARGDLI
NENDLAQWLN NGNGFAAVDV LSTEPPSSNN PLLSAANITI TPHIAWATLQ ARQNLLNIAV
ENVRKFQQGK MLNRIND