| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3048 |
|---|
| Symbol | |
|---|
| ID | 4279952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3656744 |
|---|
| End bp | 3658099 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638135868 |
|---|
| Product | xanthine/uracil/vitamin C permease |
|---|
| Protein accession | YP_751725 |
|---|
| Protein GI | 114564211 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2252] Permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCTG AACAGACTCT CTCTAACACT GCTGTTTCTG ATTCATTTTT GGATCGCTAT
TTCAATATTT CTGCCCGAGG AAGTACCTTA AAACGTGAAG TCATTGCTGG CTTAACAACG
TTTTTGGCTA TGGTTTATTC GGTAATTGTA GTGCCAAACA TGTTGGGCAC TGCTGGGTTT
GACCCTGCGG CGGTGTTTAT CGCTACCTGT TTAATTGCCG CGTTTGGTTC GTTGCTCATG
GGGCTATGGG CTAATTTACC TATGGCCATT GGTTGTGCAA TTTCACTCAC CGCATTTACT
GCATTTAGCA TGGTGCTAGG CCAGGGAATA TCGATTCCTG TCACCCTTGG CGCTATTTTC
CTAATGGGTA TCGTGTTTAC ACTTGTGAGT GTCACAGGCA TTCGTCAATG GGTACTCACT
AACCTGCCAA CCGGTATTGC TCACGGTACG GGTATTGGTA TTGGTTTATT TTTACTGCTT
ATCGCAACTA ACAGCGTTAA ATTGATTGTT TCAAACGATG CCGGTTTACC GGTAAAGCTT
GGTGATATTA ATAGCTTACC GGTTATCGCT ACAATTGTTG GTCTTGCTAT GACGATAGGG
CTTGAGCGCC GAGGCACACC AGGTGGCATA TTGCTGGTAA TCGTCGGGTT ATCGATCTTT
GGGTTAATAT TTGATCCTAG CGTAACTTAT CAAGGCCTAT TTGCTTTGCC TGACTTGATG
TCTGAAACAT CGCTAATTGG TCAGCTCGAT ATTATGGGCG CACTCAATCC AGTGGTTCTG
CCTATTGTGT TGGCGTTAGT GATGACCGCT ATCTTCGATG CCACAGGCAC AATTAGAGCG
GTTGCAGGGC AAGCGGAACT TCTCGATGAT AAAGACAATA TTGTTGGTGG TGGTAAAGCA
CTGACATCAG ACTCAGTCAG CAGTATTTTT GCAGGTGTGG TCGGCGGCGC CCCGGCGGCA
GTTTATATTG AATCGGCTGC AGGAACCGCT GCGGGTGGCA AAACTGGCCT GACAGCGACC
ATCGTTGGCA TACTATTTTT GATGATGATG TTCTTAGCGC CGTTAAGCTT TTTGGTACCG
GCTTATGCTA CTGCGCCAGC GCTGATGTAT GTTGGATTAC TGATGCTAAG CAACGTTACC
AAACTTGATT TTGACGATAA AGTGGATGCT ATGTCGGGCC TAACCTGCGC GGTATTCATC
ATTTTAAGCT GTAATATCGT TACCGGGATT ATGCTTGGAT TTGTTACCTT GGTTATTGGC
CGCATATGCA GTGGCGAGTG GCGTAAACTG CGACTTGGGG TTATGTTAAT CACCCTCGGT
TTAGTCGCCT TTTACATGGG TGGCTGGGCG ATTTAA
|
|---|
| Protein sequence | MKSEQTLSNT AVSDSFLDRY FNISARGSTL KREVIAGLTT FLAMVYSVIV VPNMLGTAGF
DPAAVFIATC LIAAFGSLLM GLWANLPMAI GCAISLTAFT AFSMVLGQGI SIPVTLGAIF
LMGIVFTLVS VTGIRQWVLT NLPTGIAHGT GIGIGLFLLL IATNSVKLIV SNDAGLPVKL
GDINSLPVIA TIVGLAMTIG LERRGTPGGI LLVIVGLSIF GLIFDPSVTY QGLFALPDLM
SETSLIGQLD IMGALNPVVL PIVLALVMTA IFDATGTIRA VAGQAELLDD KDNIVGGGKA
LTSDSVSSIF AGVVGGAPAA VYIESAAGTA AGGKTGLTAT IVGILFLMMM FLAPLSFLVP
AYATAPALMY VGLLMLSNVT KLDFDDKVDA MSGLTCAVFI ILSCNIVTGI MLGFVTLVIG
RICSGEWRKL RLGVMLITLG LVAFYMGGWA I
|
|---|
| |