Gene Sfri_3042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_3042 
Symbol 
ID4279946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3649284 
End bp3650171 
Gene Length888 bp 
Protein Length295 aa 
Translation table11 
GC content42% 
IMG OID638135862 
Productband 7 protein 
Protein accessionYP_751719 
Protein GI114564205 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAAAAA ATGGTCTGGC GCAAGCTAAC ACAAATCATC TCGGTAAAAT CATTCCTGCC 
GCAGTTTTAC TGCTAATGCT GATCAGTTTA TATGGTAGCT GGTATACCAT TGATCAGGGC
GAACGTGGGG TATTGCTGCG TAACGGTAAA ATTATCGATA CTGCAGAACC AGGTCTTGGA
TTTAAAATTC CACTAATGGA TACCGTGGTT AAGATCTCAA CCCAAACTCA CACCGCAAAC
TACCAAGGTT TACAGGCGTA TAGCCGCGAT CAACAACCTG CCACATTACG CGCATCAGTC
ACATTTAGCA TACCGCCAGA TCGTGTTGAA GAAGTGTATG CTAATTTCAA AAGTATCGAC
TTAATGGTGT CGCGTTTACT CGACCGCCAA GTACCAACAC AGATTGAGAA TATTTTTGGT
AAGTATACGG CTATTTCAGC CGTTCAAGAG CGTATCAAGT TTGGTATTGA TGTGACTGAC
GCCATTACTA AATCGATTAA AGGCCCGGTG ACCATTAATT CGGTACAGAT TGAAAATATC
GACTTTAGCA ACGCATACGA GAAATCAGTA GAAGACAGAA TGCGTGCAGA AGTAGAAGTA
CAGACACAAT TACAGAATCT TGAAAAAGAG CGTGTTAGTG CCCAAATTGC CGTGACTCAA
GCACAAGCTG AAGCAGACTC ACAATTGGCC CGCGCAATTG CCGAAGCTGA AAGTATCCGT
ATTAAAGGTA ACGCAGAAGC ATCAGCCATT AAAATTCGTG CTGAAGCACT AGCGCAAAAT
CAAAATTTAG TTGAATTAAC TAAAGCGGAA CGTTGGGATG GGCGCTTACC AACAACTATG
CTACCTACTG GTACTATCCC GTTCCTTGAA GTACAAACAA CCAAATAA
 
Protein sequence
MLKNGLAQAN TNHLGKIIPA AVLLLMLISL YGSWYTIDQG ERGVLLRNGK IIDTAEPGLG 
FKIPLMDTVV KISTQTHTAN YQGLQAYSRD QQPATLRASV TFSIPPDRVE EVYANFKSID
LMVSRLLDRQ VPTQIENIFG KYTAISAVQE RIKFGIDVTD AITKSIKGPV TINSVQIENI
DFSNAYEKSV EDRMRAEVEV QTQLQNLEKE RVSAQIAVTQ AQAEADSQLA RAIAEAESIR
IKGNAEASAI KIRAEALAQN QNLVELTKAE RWDGRLPTTM LPTGTIPFLE VQTTK