| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_3005 |
|---|
| Symbol | |
|---|
| ID | 4279909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3608965 |
|---|
| End bp | 3610251 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 638135825 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_751682 |
|---|
| Protein GI | 114564168 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.432332 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCA CACCTCATGC TAGTTCATAT TATGCTGCAT CGGCTAATGA TAAAGTCGAA
CGTCCTCGCT TAGAATCTAC AATTGAAACA GATGTTTGTG TTATTGGCGC GGGCTATACA
GGGTTGTCTT CTGCGTTACA TTTATTAGAA AGCGGCATGA AAGTTGTGGT GCTTGAAGCG
GCCAGAATTG GCTGGGGAGC ATCTGGTCGA AACGGCGGTC AAATTGTCAA TTCTTTTAGT
CGTGACATTG ATTCTATCGA AGGCGTTGTC GGCAAAGAAC AAGCTAAACT TTTTGGTCAA
ATGGCGTTCG AAGGTGGTCA GATTATTCGT GACCGTATTG CCAAATACAA CATTGATTGC
GACTTAAAAG ATGGTGGTGT TTTTGCCGCC ATGAACGCCA AGCAAATGGG CCATTTACAG
AGTCAAAAAT CATTATGGGA AGCTCATGGT CATAACAATC AATTAGAGTT ACTCGACCAG
GATGGCATTC GCAAAGTGGT TAATACCGAT TTATATGTCG GTGGTTTACT CGATAAAAGC
GGTGGCCATA TTCATCCTCT CAACCTTGCA TTAGGTGAAG CCCGTGCGGT GGAATCACTT
GGTGGACTGA TTTTTGAAGA TTCTGCGGTT ATTAAAGTGG ACGATGGTGC GTCACCGGTT
GTGCACACTG CTCAAGGCCA GGTTAAGTGT AAATTTGTGG TGGTGGCTGG TAATGCTTAT
TTAGGTAAAT TGCTGCCAGA GCTACAAGCT AAATCAATGC CTTGTGGTAC TCAAGTGATT
ACCACTGAAC CATTGTCAGA TGAAATGGCT GCGAGTCTAT TACCGCAAGA CTATTGCGTT
GAAGACTGTA ACTACCTATT AGATTATTAC CGCCTTACTG GTGATAAACG CCTTATTTTT
GGTGGCGGCG TGGTTTATGG TGCGCGCGAT CCGGCCAACG TTGAAGCCTT GATTATGCCT
AAACTATTAA AGACTTTCCC GCAGTTAAAG GGGATTAAAG TTGACTATGC TTGGACTGGT
AACTTTTTAA TGACGTTATC GCGTCTGCCG CAAGTGGGCC GTATTGGGGA TAATATTTAT
TACTCACAAG GCTGTAGCGG TCATGGGGTT ACCTATACTC ATTTAGCAGG TAAGTTAATT
GCCGAAATGC TTAATGGCCA AGCCACACGT TTTGATGCCT TTGCCGCATT ACCACATTAT
CCATTTCCTG GCGGGCACGC ACTTAGAGTG CCATTTAGTG CCTTAGGTGC GTGGTATTAC
ACGTTACGTG ACAAGTTTGG CATATAG
|
|---|
| Protein sequence | MSATPHASSY YAASANDKVE RPRLESTIET DVCVIGAGYT GLSSALHLLE SGMKVVVLEA
ARIGWGASGR NGGQIVNSFS RDIDSIEGVV GKEQAKLFGQ MAFEGGQIIR DRIAKYNIDC
DLKDGGVFAA MNAKQMGHLQ SQKSLWEAHG HNNQLELLDQ DGIRKVVNTD LYVGGLLDKS
GGHIHPLNLA LGEARAVESL GGLIFEDSAV IKVDDGASPV VHTAQGQVKC KFVVVAGNAY
LGKLLPELQA KSMPCGTQVI TTEPLSDEMA ASLLPQDYCV EDCNYLLDYY RLTGDKRLIF
GGGVVYGARD PANVEALIMP KLLKTFPQLK GIKVDYAWTG NFLMTLSRLP QVGRIGDNIY
YSQGCSGHGV TYTHLAGKLI AEMLNGQATR FDAFAALPHY PFPGGHALRV PFSALGAWYY
TLRDKFGI
|
|---|
| |