| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2999 |
|---|
| Symbol | |
|---|
| ID | 4279903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3600502 |
|---|
| End bp | 3602148 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638135819 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_751676 |
|---|
| Protein GI | 114564162 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCATA GTATAAAAGC CAAAGTCATC ACTATATTCT CTTTAGTCAT GATTGCTTTC
ACGTCTGTGC TTTTACTCAC TATATTTATC AATGAACGTG ATCGCGTATT GGATTTAGCT
TTAGAAAACT CTACCAAAAT TTCAAAAATG CACGCCAATC TCCTCAGCCA AGAATTTGCT
CGATATGTTG TCATGTTAAA AATGCTCAGT AACAACCCGA ATACAAAGTT AGGCGATAAA
CCTACAATCG CTCGACAGCT CAAAAGACTC ATGACAATGG GGCGTGGTAA TTTCATTAAT
GCTATTTATG TAGACAAAAA TTTAAATTTG ACAGATGTGT TAGGCAATAC AAATAAAGTC
ACTCACCCTT CATTTATGCG TGCAGAACAA TGGGTAGGTA AACAATATAA TATTAGCGTG
CCAGTCATCA CTCGGTTTGA AAAGACTCCG GTCATCATGG TGGGAGTACC TATTTTAGAC
ACGCAAAATA ACTGGATGGG AACGCTTGCT GTGGCGGTGC CTCTAACCAT TATCTCCGCT
AAACTGGCGG AAATTAAGCT CGCAAAAGAG AGTTACGCTT GGTTAACTGA CTCGAATGGT
TTAATGGTTT CACATCCAAA TAAAAGTTTT ATAATGAAGA ATAAACTTTC AATGACGGAA
AATGCTGACT ATCCAGGGTT TTATAAAATA GTCAGACAAA CTAAATTACA AAATGATGGT
TATGGGCGTT ATATGGACGC CACATTAAAT GAATCGAAAA TAGTCACATT TTCTAAAGTT
GATTATCTGC CTGGCTGGAC CTTGTTTGTC ACAACTAAAG AGTCTGAAAT TTTTCACGAC
ATATATACAA TTATGTACGA TGTATTAGTC ACTTCAATTA TTTTGATGGT GATATTTTTA
TTACTCATTA GTGAGCTATC CAATAGAATA ACAAAGCCAA TCGTGCAACT GACCAAAGAT
GTAAAAGCTT CTGTCAAAGA TAAAAAAAGT TATCTAAAAA TAATCGATTC AGATGACGAA
ATAGGTCAAC TGTCTAAAGC TTTCCACGAT AGTCTTCAAA AAATACACTC ACACACTACC
CATTTAGAAC AAATGGTCAA TCATCGAACT CAAGAAATTA CCGACAAAAA TTTACTTCTG
AATCAGCAGA ATGAAAAGCT TGAACAGCTT GCATCCAAAG ACCCGTTAAC GTTGCTTTAT
AATCGTCGAG CCTTTAGTGC TCTGGTTGAT AAAGAGATCT CCCGCGCTAA GCGACATCAT
TTTCCTATAA CTTTGGTCAT ATTAGACATT GACCACTTCA AAAAGATTAA TGATGAGTTT
GGGCACAATG TTGGTGATGA TATTTTGTGT CGTTTTGCGG ATGAATTGTC TTTAAATATG
CGCAAAGAAA ATCTCATCTG TCGCTGGGGT GGAGAAGAGT TTGTCATTTT AATACCAGAA
GCGACTTCGA CTATGGTGTT TAAACATATT GAAGAGGTTC GTCAAAAAAT CTCACAGATG
AGCTTTTCGC CAGTCGAAAA GTTAACCTTT AGTGCTGGCA TAGCTACTCT TCGTGTTGAA
GAGCCTTTTA AAGAGTGGTT CCAAAGAGCT GATAGTGCTT TGTACCAAGC GAAGGGCGCT
GGCCGAAATT GCATCATAAC GGATTGA
|
|---|
| Protein sequence | MFHSIKAKVI TIFSLVMIAF TSVLLLTIFI NERDRVLDLA LENSTKISKM HANLLSQEFA
RYVVMLKMLS NNPNTKLGDK PTIARQLKRL MTMGRGNFIN AIYVDKNLNL TDVLGNTNKV
THPSFMRAEQ WVGKQYNISV PVITRFEKTP VIMVGVPILD TQNNWMGTLA VAVPLTIISA
KLAEIKLAKE SYAWLTDSNG LMVSHPNKSF IMKNKLSMTE NADYPGFYKI VRQTKLQNDG
YGRYMDATLN ESKIVTFSKV DYLPGWTLFV TTKESEIFHD IYTIMYDVLV TSIILMVIFL
LLISELSNRI TKPIVQLTKD VKASVKDKKS YLKIIDSDDE IGQLSKAFHD SLQKIHSHTT
HLEQMVNHRT QEITDKNLLL NQQNEKLEQL ASKDPLTLLY NRRAFSALVD KEISRAKRHH
FPITLVILDI DHFKKINDEF GHNVGDDILC RFADELSLNM RKENLICRWG GEEFVILIPE
ATSTMVFKHI EEVRQKISQM SFSPVEKLTF SAGIATLRVE EPFKEWFQRA DSALYQAKGA
GRNCIITD
|
|---|
| |