| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2983 |
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| Symbol | |
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| ID | 4279888 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3583737 |
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| End bp | 3585410 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135803 |
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| Product | peptidoglycan binding domain-containing protein |
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| Protein accession | YP_751661 |
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| Protein GI | 114564147 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTATAAAG CCTTCTATGG ATTAAACGAT AACCCATTTT CTATCGCGCC TAACCCTCAT
TATATGTTCT TAAGTGACCG CCATCGTGAG GCGTTGGCTC ATTTAACCTA CGGCCTTGGT
GAAACCGGTG GTTTTGTATT ATTAACGGGT GAAGTCGGCA CTGGAAAAAC CACTGTTTCT
CGCTGCTTAT TACAACAAAT TCCCGATAAT ACCGATACCG CGTTTATTCT TAACCCATCA
TTGACTGAGC TTGAACTCTT GGCCACGCTA TGTGATGAGC TGGAAATTAA GTACGGTGAT
AATCCGACGT TAAAACAGCT GACAGATTTA ATCAGCATGT ACTTACTGAA TAATCACAAA
AATGGTCGTA ATACGGTGCT GATTATTGAT GAAGCACAGC ATCTGCGTTC TGAAGTATTA
GAACAGCTGC GTTTATTGAC CAATTTAGAA ACTAATACCA AAAAACTGCT GCAAGTGATT
TTGATTGGCC AGCCCGAATT ACAACAACTG CTAAAGCGCC AAGACTTACG TCAGTTAGCA
CAGCGGATCA CTGCTCGCTA TCATTTACTA CCGCTAAATA AAGATGAAAT TGCTTTATAT
GTGCTGCATC GTTTGCAGGT GGCTGGTAGG CATGAGCCTT TATTTACGCG TAAAGCGATA
ACCGCATTGC ATAAACATTC TGGCGGTATT CCGCGTTTAA CCAACTTATT ATGTGAACGT
GCATTAATGG CTGGTTATGG GCAAGCTAAG GTTCCGATCG ATCATAAAAT GGTTAATCAA
GCGGCTGTCG AAGTATTGGG TGATATTGAT GTACCTGGCG ATAAACGCTG GCCATTTATT
GCCGCTACAG CGTTAGTGCT CGCTTTTGGT TTATCATTCT ATCTGTTTAA TCGTTCAGCC
TTTGAAAACA ATATGAGTGC CAATGCGGCG ATAGCAGATG TTCAAGCGCA ATCTAGTCTA
GCCAATCAAA CGCCTGCATC TATGCCAAGT AAGATAAACC AAGCTGCACA AACTCAGCCT
CAGCAAGTAC AAGCAGCAAC TCCAGTTGCC AATGCACAAC AACAAATTAT GCGTCAAGCC
ATGCTACAAA GCAGTAGCAT TGATAATGCC TTTGCCGGAT TATTCGGCTT GTGGAATAAA
CAACCTATTA TCGGCTTGTC TGCTTGCCAG GCGGCACAAC AACAAGATTT AGCCTGTTAC
CAGCAACAAG GTAATTGGCA CAGTATTATG CGCCTTAATT ACCCTGCGGT TGCTTACTTG
CAAGACGCAC AAGCGAATGT GTTTTATGGC GTAATTGTTG AGCGTCAAGC CGAGCAGATC
CTACTGCAAT TAGGCGAGCA ACAGTTTTGG GTGAATAAAG ATTGGTTTGA CCGCCACTTT
AGCGGCACCT TCGAAATTTT GTGGCAACCA GACAGTATCT TACCGCGAGA AATTGGCCAG
TCTTCTAGTT TGGCGCAAGT ACAATGGCTT GAAAATAGCT TAGCGTTAGT TAACAAACGA
CGTGCACGAC TACTGACACA GTTTGATAGT GAATTAGAGC AACAATTAAT GACTTTTCAA
CGTCAACATG GTTTAAAACC AGACGGTATA GCAGGCAATC AGACTTTGGT GCAACTTAAC
TTATATTTGA GCCAGCAAGG CCCACGTTTA AGTGCCTCTG AGGTGCGCAG TTAA
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| Protein sequence | MYKAFYGLND NPFSIAPNPH YMFLSDRHRE ALAHLTYGLG ETGGFVLLTG EVGTGKTTVS
RCLLQQIPDN TDTAFILNPS LTELELLATL CDELEIKYGD NPTLKQLTDL ISMYLLNNHK
NGRNTVLIID EAQHLRSEVL EQLRLLTNLE TNTKKLLQVI LIGQPELQQL LKRQDLRQLA
QRITARYHLL PLNKDEIALY VLHRLQVAGR HEPLFTRKAI TALHKHSGGI PRLTNLLCER
ALMAGYGQAK VPIDHKMVNQ AAVEVLGDID VPGDKRWPFI AATALVLAFG LSFYLFNRSA
FENNMSANAA IADVQAQSSL ANQTPASMPS KINQAAQTQP QQVQAATPVA NAQQQIMRQA
MLQSSSIDNA FAGLFGLWNK QPIIGLSACQ AAQQQDLACY QQQGNWHSIM RLNYPAVAYL
QDAQANVFYG VIVERQAEQI LLQLGEQQFW VNKDWFDRHF SGTFEILWQP DSILPREIGQ
SSSLAQVQWL ENSLALVNKR RARLLTQFDS ELEQQLMTFQ RQHGLKPDGI AGNQTLVQLN
LYLSQQGPRL SASEVRS
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