| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2965 |
|---|
| Symbol | |
|---|
| ID | 4279870 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3563575 |
|---|
| End bp | 3565839 |
|---|
| Gene Length | 2265 bp |
|---|
| Protein Length | 754 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638135785 |
|---|
| Product | diguanylate phosphodiesterase |
|---|
| Protein accession | YP_751643 |
|---|
| Protein GI | 114564129 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTTC TGAATGATTT TTTCCTGCTT AGCGATGATA ACAATGCAAA TGAGTTAATA
GACAACTGGC GAATAAGTGC ACTAAGGATA ATTTTATCCT CGGGTTTATT ACTGTGCCTT
GCGATCACGT TTGACACCTT TAGCTCAGCC TTTCAGCTCA ATTATTTATG GGTTATCGCG
AATACCTTAG GTTTCACTTC GATACTATTT TTACTGCTAC TAGCCAGTAA GCGATTTTAT
CATGCTTGTG CACATCTACT CCTTGTAGCC ATAGTGTTGG CAAGTTTTGT AATGAACTTA
ACTCTAACTG ACTTAACCTT AGCGAAAATT GGCAGTATGC TGATATTTGT TTGTCCAGCG
ATTGCACTTA TATTGTTAGG TCGTAGAGTG GCAATCTGTT ATGCCTTATT AAACATCGCG
CCCTTTTATA TCATTTTGCA TGATATCAAC CTGTCTCAAT ATACCAATAT AAATAAGCAA
CTCCCTGATG CAAGTTGGTA TATTACTGGA GTGGTTTTTC TATTTTTTAA TATCTGTGTG
CCTTTAGCAG TAGCAAGAAC CATTGTCGCA GCTAAACGTC TCAATGAGGC AACATTAAAT
TCAAACGCTT ATCTAAAAAG TAAAAATGAG CTTTACCACA CTTTTTTTGC AGAATCGACT
ACCCCGAAGA TCATTGTCGA TGATATGGGG AAAATCACTG ATGCTAACCA ACAAGCTATT
GATTTACTCA AATTACCTAA AACATTAAAT AGCGAAACGT TATTGCTTTC GTCTGTCATG
CCAAACTTAA AAACTTGTGA CGCAGCTAAG CAAGAACAAA TATTGCACTT CAATAATACC
TATCAGCGAG TTGTCCATCA GCAACTAACC GATGCTAACT TTTGTGTTTA TGAATTTCAT
GATTGCAGCG CAGAACAGAG CATTAAAGCC AATTTGGCCG CCATGGAACA AGAGAACAGA
CGTCTACGTT ATCGCGATGC ACAAACACAG TTGCCGAACC GAGATTGGTT TGAACTGCAA
TGTGACCGCC TAATAGCAAA ATATCGAAAA GGCTTTTATG TGGTTGTGGC TCAAAGCGCC
AATAACGACT ATTTAAATAT AAAATTTGGT AACCATAATT CCCAAACTAT CACTAAAACA
GCCTTTAAAC GGCTGCGTAA CGATATTGAA GGACCTTTAT TATGTGCTCA TATTGGACCA
GGGAAAATTG CCTTTATTCT TGGTAGCCTT AACGAAACGG ATCTTTATAG TGCCTTGCCT
AAAATCAAAC ATATTTTAGA TGAAGATTAC AATTTACTAG GAGTTAAGTC TTCGCAATCA
TTTCTATTTG GTATTGCCCA TTGCCCAGAA CACGGAGATG CAAGCGGTAA AGTTGTCGCT
CATGCTATCG AGGCGCTTAA ATTAGCCAAT ACCCACGATG TATTTAGCTT ATATGACCAA
ACCAATTCAC AAAGCTTTTT AGAGAAATAT GAAATATCGA TGTTGCTCGA TGAAGCACTA
CAACAAGGTG AGCTTACCGT TCATTATCAA CCTAAAGTCA CTGCATCAGG ACAATGTATC
GGCCTTGAAG CGTTGGCTCG ATGGAACAGT CCCATTTTAG GTACTGTATC ACCAGCGGTA
TTTATCCCTA TTGCAGAAGA GTACCGAATG ATCAGCCGTT TAACGGATTT GGTAGTACAA
AAAGTTTGCT CGCAAATCAA CCAATGGACC CAGCAAGGGC TTAACTGTGT ACCGGTAGCG
ATTAATATCT CATTAATTGA CTTCAGCCAA ACTGACTTTA TGTCTAAGTT AGTCAAGCAT
TTGGCAGACT TTACTGTCAG CCCGAAACAA ATTGAGCTGG AGTTAACCGA AACTTCATTA
GAAGCCAATC AAGCTCACTC GTTAATATTA ATGAAAACCT TACAATCATG GGGATTCACT
ATCTCGGTGG ATGATTTTGG CGTGGGTTAT TCCAACATCG CGCGCTTAGC TGACTACCCT
ATCAATAAAC TTAAGTTAGA CCGTTCACTA ATAAGCCAAG TTACCACTTC AGCTCGTCAG
CAAAGCCTTG TCCGAGCCAT TCATAACATG TGTGAAGAAC TCAGTATAAA ATGTGTTTCA
GAAGGCGTAG AAACAGCTGA ACAGGTAAAG ATTATGGCTG ATATGGGCTG TAAGGAATTT
CAAGGGTTTT ATTTTTCAAA ACCCATTACG CCAAAGCAAT TTTTTGCTCA CGTCAGTCAA
AAGGGACTGG TATTTGAGCA TCAAGACACT TTAATAAAAG CTTAG
|
|---|
| Protein sequence | MSFLNDFFLL SDDNNANELI DNWRISALRI ILSSGLLLCL AITFDTFSSA FQLNYLWVIA
NTLGFTSILF LLLLASKRFY HACAHLLLVA IVLASFVMNL TLTDLTLAKI GSMLIFVCPA
IALILLGRRV AICYALLNIA PFYIILHDIN LSQYTNINKQ LPDASWYITG VVFLFFNICV
PLAVARTIVA AKRLNEATLN SNAYLKSKNE LYHTFFAEST TPKIIVDDMG KITDANQQAI
DLLKLPKTLN SETLLLSSVM PNLKTCDAAK QEQILHFNNT YQRVVHQQLT DANFCVYEFH
DCSAEQSIKA NLAAMEQENR RLRYRDAQTQ LPNRDWFELQ CDRLIAKYRK GFYVVVAQSA
NNDYLNIKFG NHNSQTITKT AFKRLRNDIE GPLLCAHIGP GKIAFILGSL NETDLYSALP
KIKHILDEDY NLLGVKSSQS FLFGIAHCPE HGDASGKVVA HAIEALKLAN THDVFSLYDQ
TNSQSFLEKY EISMLLDEAL QQGELTVHYQ PKVTASGQCI GLEALARWNS PILGTVSPAV
FIPIAEEYRM ISRLTDLVVQ KVCSQINQWT QQGLNCVPVA INISLIDFSQ TDFMSKLVKH
LADFTVSPKQ IELELTETSL EANQAHSLIL MKTLQSWGFT ISVDDFGVGY SNIARLADYP
INKLKLDRSL ISQVTTSARQ QSLVRAIHNM CEELSIKCVS EGVETAEQVK IMADMGCKEF
QGFYFSKPIT PKQFFAHVSQ KGLVFEHQDT LIKA
|
|---|
| |