| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2952 |
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| Symbol | gltD |
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| ID | 4279857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3545478 |
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| End bp | 3546884 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638135772 |
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| Product | glutamate synthase subunit beta |
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| Protein accession | YP_751630 |
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| Protein GI | 114564116 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
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| TIGRFAM ID | [TIGR01318] glutamate synthase small subunit family protein, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 37 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAATG ACTTTCAATT TGTAGAAGTG GGTCGAGTAG ACCCCATTAA ACATGAAGCG
AAAAAACGTG CTACACAATT TATTGAAATT TATCAGCCGT TTACGCAACC AGAAGTAAAA
CAACAAGCCG ATCGCTGTCT TGACTGCGGT AACCCGTATT GTGAATGGAA GTGCCCACTG
CACAACTACA TTCCAAACTG GTTAAAACTG GCAGAAGAAG GTCGCATTAT GGAAGCGGCA
GACTTGGTGC ATGAAACCAA TACTCTGCCA GAAATATGTG GCAGGGTGTG CCCACAAGAC
CGTTTATGCG AAGGTGCTTG TACCTTAAAC GACGACTTTG GTGCGGTCAC CATTGGCAGT
GTTGAAAAAT ACATTACCGA TACTGCAATT GCCCAAGGCT GGCGCCCAAA CATGAAGGAT
GTGACGCCAC GTAAAGAGCG TGTTGCCATT ATTGGAGCGG GTCCTGCGGG TCTTGGCTGT
GCTGATGTGT TGGCTCGTAA TGGTGTGCAA GCCGTGGTGT ATGATAAATA CCCACAAATT
GGTGGTTTGC TCACTTATGG CATCCCTTCT TTCAAGCTTG ATAAAGAGGT GATGGCCACT
CGCCGTTCAG TGCTTGAAGG CATGGGCATT CAATTCAAAA TGGGTGTCAC TGTCGGCAAG
GATGTGAGTT TTCAAAGCCT GTTAGACGAG TACGATTCAG TCTTCCTTGG TATGGGTACT
TACACGGCCA TGAAAGCTAA ACTGCCTAAT GAAGACGCTG AAGGCGTTAT TCAAGCGCTG
CCGTATCTTA TTGGCAATAC TCATCACATT ATGGGTACTC AAGACGACGC TACCCCTTAT
CTAAGCCTTG AGGGTAAAGA TGTGGTGGTA TTAGGCGGCG GTGATACGGC AATGGATTGT
GTGCGCACAG CCGTTCGTCA AGGTGCTAAG AGTGTGACAT GTGCTTATCG TCGTGACGAA
GCCAACATGC CGGGCTCTCG CCGTGAAGTG CAAAATGCGC GCGAAGAAGG CGTTAACTTC
TTATTTAATC GTCAACCCGT GGCAATTAAA GCTGAAAACG GTCAAATCGT TGGGATTGAA
TGCGTTGAAA CCAAAATGGG AGAAGCTGAT GCCAGTGGAC GTCAACGCGC TGAAATCATT
GCTGGTAGTG AGCAAGTGTT AGCAACCGAT GCGCTGATTA TAGCCTTTGG TTTCCAAGCT
AGTCCTGCTG CTTGGTTTAG TGATTTTGGT ATTGAAACCA ACGAATGGGG ATTAGTTAAA
GCCAAGAAAA CCGACGACAA TCCATTCCAA ACCACTAACC CGAAAGTGTT TGCTGGTGGT
GATATGGTGC GAGGTTCTGA CCTAGTGGTA ACGGCTATAG CAGAAGGTAG AGATGCAGCA
TTAGGCATTT TAAACTATTT AGACTAA
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| Protein sequence | MSNDFQFVEV GRVDPIKHEA KKRATQFIEI YQPFTQPEVK QQADRCLDCG NPYCEWKCPL
HNYIPNWLKL AEEGRIMEAA DLVHETNTLP EICGRVCPQD RLCEGACTLN DDFGAVTIGS
VEKYITDTAI AQGWRPNMKD VTPRKERVAI IGAGPAGLGC ADVLARNGVQ AVVYDKYPQI
GGLLTYGIPS FKLDKEVMAT RRSVLEGMGI QFKMGVTVGK DVSFQSLLDE YDSVFLGMGT
YTAMKAKLPN EDAEGVIQAL PYLIGNTHHI MGTQDDATPY LSLEGKDVVV LGGGDTAMDC
VRTAVRQGAK SVTCAYRRDE ANMPGSRREV QNAREEGVNF LFNRQPVAIK AENGQIVGIE
CVETKMGEAD ASGRQRAEII AGSEQVLATD ALIIAFGFQA SPAAWFSDFG IETNEWGLVK
AKKTDDNPFQ TTNPKVFAGG DMVRGSDLVV TAIAEGRDAA LGILNYLD
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