| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2935 |
|---|
| Symbol | |
|---|
| ID | 4279840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3523923 |
|---|
| End bp | 3524501 |
|---|
| Gene Length | 579 bp |
|---|
| Protein Length | 192 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638135755 |
|---|
| Product | RNA polymerase sigma factor RpoE |
|---|
| Protein accession | YP_751613 |
|---|
| Protein GI | 114564099 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0799622 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGGAC AATATAGTGA TCAACAATTA GTTGAACGAG TACAGCAAGG CGATAAAAAT
GCATTTAACC TGTTAGTGCT GAAGTATCAA AATAAAGTGA TGAGTTTGAT TTCCAGATAT
GTTCGCAATC AAGCGGATGT TGCGGATGTG ACACAAGAAG CCTTTATTAA AGCGTATAGA
GCATTAGCAA ATTTTCGTGG TGAAAGTGCA TTTTATACTT GGTTGTATCG TATTGCGGTA
AACACCGCAA AAAACCATCT TACATCGCAA GGGCGCAGAG CACCTGCAAA CGATGTCGAT
ATAGAAGATG CAGAATATTA TGAAGGCAGT GATGCGTTAA AAGAGTTTGC ATCACCAGAG
CGGTTATTAA TGAAAGATCA AATGAGTAAA GTGATCTTCG ATACGCTCGA TACTCTGCCT
GAAGAATTAA AAATGGCAAT ATCACTCAGA GAGCTAGAAG GTATGAGTTA TGAAGATATT
GCTAATATAA TGGATTGCCC TGTTGGCACA GTAAGATCGC GTATCTTTCG TGCTCGAGAA
GCAATCGACA AACAGCTCCA GCCTTTGCTG GAAAAGTAA
|
|---|
| Protein sequence | MSGQYSDQQL VERVQQGDKN AFNLLVLKYQ NKVMSLISRY VRNQADVADV TQEAFIKAYR
ALANFRGESA FYTWLYRIAV NTAKNHLTSQ GRRAPANDVD IEDAEYYEGS DALKEFASPE
RLLMKDQMSK VIFDTLDTLP EELKMAISLR ELEGMSYEDI ANIMDCPVGT VRSRIFRARE
AIDKQLQPLL EK
|
|---|
| |