Gene Sfri_2929 details

Gene Information

• Locus tag: Sfri_2929
• Symbol: rnc
• ID: 4279834
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 3517560
• End bp: 3518240
• Gene Length: 681 bp
• Protein Length: 226 aa
• Translation table: 11
• GC content: 40%
• IMG OID: 638135749
• Product: ribonuclease III
• Protein accession: YP_751607
• Protein GI: 114564093
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACCCA TTAAAAATTT GCCGCGTTTG TGCCGTACTT TAGGTTATGA GTTCAATAAT 
ATTGAATTAC TTATTCAGGC CTTAACACAT CGTAGCGCAG CAAATAAACA TAATGAGCGT 
TTAGAGTTTT TAGGTGATTC GATTTTATCG ATAGCCATTT CAGATGCCTT ATATCATCAG 
TTCCCAAAGG CGACTGAAGG TGATTTAAGC CGTATGCGCG CCACTTTAGT CAAAGGTGAC 
ACGCTGACAA TCATCGCTAA AGAGTTCAAG CTAGGTGATT ATTTGTATTT AGGCCCTGGT 
GAACTCAAAA GTGGTGGCTT TAGACGCGAA TCTATTTTAG CTGATGCTGT AGAGGCTATT 
ATTGGTGCTG TCTATCTTGA TGCTGATATT GAAGTGTGCC GAAAGCTATT ATTATCATGG 
TATCAAGAGC GTTTAGCTGA GATTAAACCG GGTATTAATC AAAAAGATCC GAAGACAATA 
TTGCAAGAAT ACCTGCAAGG TTTTAAAAAG CCATTGCCTG ATTACCAAGT TGTTGCAGTA 
GAAGGTGAAG CCCATGATCA AACCTTCACC GTAGAATGTA AAATTAGTGA ATTAGATAAA 
GTTGTCACTG GTGTGGCAAG TTCAAGAAGA AAAGCTGAAC AGCTTGCCGC TGCTCAGGTA 
TTGGAGCTAC TGAATAAATG A 

 

Protein sequence

MEPIKNLPRL CRTLGYEFNN IELLIQALTH RSAANKHNER LEFLGDSILS IAISDALYHQ 
FPKATEGDLS RMRATLVKGD TLTIIAKEFK LGDYLYLGPG ELKSGGFRRE SILADAVEAI 
IGAVYLDADI EVCRKLLLSW YQERLAEIKP GINQKDPKTI LQEYLQGFKK PLPDYQVVAV 
EGEAHDQTFT VECKISELDK VVTGVASSRR KAEQLAAAQV LELLNK