| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2918 |
|---|
| Symbol | trmD |
|---|
| ID | 4279823 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3508009 |
|---|
| End bp | 3508755 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638135738 |
|---|
| Product | tRNA (guanine-N(1)-)-methyltransferase |
|---|
| Protein accession | YP_751596 |
|---|
| Protein GI | 114564082 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0336] tRNA-(guanine-N1)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00088] tRNA (guanine-N1)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0000974406 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGGTTAG GGGTAATCAC CCTGTTTCCA GAGATGTTTC GTGCTGTTAC AGACTTTGGG
GTTACGGGTC GAGCCGTGAA AAACGGCCTG CTAGAGGTGC AAACGTGGAA TCCTCGAGAT
TTCACCCATG ATAGACATAA TACTGTGGAC GACCGACCTT ATGGTGGTGG GCCCGGTATG
TTAATGATGG TGCAACCTCT GCGTGATGCT ATCCATGCAG CTAAAGCAGC TGCAGGTGAT
AGGGCAAAAG TGATTTATCT ATCTCCTCAG GGACGCAAGC TGGATCAGCA TGGCGTTACT
GAGTTAGCTA AATCAGAGTG TTTGATTTTA GTGTGTGGTC GATACGAAGG TGTTGATGAG
CGCATAATTC AAACAGAAGT TGATGAAGAA TGGTCTATCG GTGATTACGT ACTTTCGGGT
GGTGAGTTAC CGGCAATGAC TTTAATCGAT TCAGTGGCTC GTTTAGTACC TGGTGTACTA
GGCAAGCAAG CGTCAGCAGA GCAAGATTCT TTCTCTGATG GTTTACTGGA TTGTCCTCAT
TATACACGCC CTGAACAATT GGATGGTCTT GACGTACCCG CAGTGCTGCT AAGCGGTGAC
CACGAAAAAA TTAGACTCTG GCGTTTACAA CAAAGTATCG GAAGAACTTT TTTGAGACGA
CCAGAATTAT TTGAAAATCT AGCTCTGACT GACGAACAAA CGACTTTATT AGCGCAGTTC
GTGAATGAAA CGGACAAGTC CGCATAG
|
|---|
| Protein sequence | MWLGVITLFP EMFRAVTDFG VTGRAVKNGL LEVQTWNPRD FTHDRHNTVD DRPYGGGPGM
LMMVQPLRDA IHAAKAAAGD RAKVIYLSPQ GRKLDQHGVT ELAKSECLIL VCGRYEGVDE
RIIQTEVDEE WSIGDYVLSG GELPAMTLID SVARLVPGVL GKQASAEQDS FSDGLLDCPH
YTRPEQLDGL DVPAVLLSGD HEKIRLWRLQ QSIGRTFLRR PELFENLALT DEQTTLLAQF
VNETDKSA
|
|---|
| |