Gene Sfri_2916 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2916 
Symbol 
ID4279821 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp3506026 
End bp3507117 
Gene Length1092 bp 
Protein Length363 aa 
Translation table11 
GC content42% 
IMG OID638135736 
Productphospho-2-dehydro-3-deoxyheptonate aldolase 
Protein accessionYP_751594 
Protein GI114564080 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase 
TIGRFAM ID[TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.000442965 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACAAG ATACCATTAA TAATGTGCAC ATCAGTTCAG AACAAGTGCT AGTGACTCCA 
GCAGAGTTAA AGCAAGAACT TCCATTATCA ACTCATGCTT ATCAATATAT TCTAAATGCT 
CGCAAGCAAG TCTCAGATAT TGTCCACAAA CGTGATAATC GGGTGCTTGT GGTGACGGGG 
CCATGCTCTA TTCATGATAT TGCAGCGGCA AAAGAGTATG CATTAAAACT GAAAAAGTTA 
CATGATGAAC TCAGTGATGA CTTCTACATC TTAATGCGCG TGTATTTCGA AAAGCCTCGC 
ACAACGGTCG GCTGGAAAGG GTTGATTAAT GACCCTGATA TGGATGAGTC ATTTGATGTC 
GAGAAAGGAC TCCGAATGGC TCGAGAACTC ATGATTTGGC TTGCTGAACT TGAATTGCCT 
ATCGCGACAG AAGCGCTGGA TCCGATCAGT CCACAATATT TGTCCGAATT AGTTACTTGG 
TCTGCAATTG GCGCAAGAAC CACAGAGTCG CAAACTCATC GAGAAATGGC TTCAGGTTTG 
TCGATGCCTG TTGGTTTTAA AAATGGCACA GATGGTAAGT TGGAAGTGGC TATTAATGCA 
TTAAAATCAG CTGCCAGCAG CCACCGCTTT ATGGGCATTA ACCAAGAAGG TCAAGTTTCA 
TTATTGCAAA CAGCTGGTAA CCCAGATGGG CACATTATTT TGCGTGGCGG GTTAGCGCCT 
AACTATGATG CTGACAGTGT TGCTCAGAGT GAAGCACAAA TTCATAAAGC CAAACTCAGT 
GCTCGTTTAG TCGTTGACTG CAGTCACGGT AATTCTTCAA AAGATCATCA ACGTCAAAAA 
AACGTTTGCG AAGATGTATT TAACCAAATT GAAGCAGGCA ATAAATCTAT CATCGGTGTT 
ATGCTTGAAA GTAACCTCAA TGAAGGTAAT CAGAGTTCAG ATAAACCGTT AGCAGAGCTA 
AAGTATGGTG TTTCTGTCAC TGACGCATGC ATTGATTGGG AAACTACCGA AACCATTTTA 
AGACAAGGCG CTAACCAGTT GTCTGCAGTA TTACCAACAC GTTTTGAGAC GCTGCAGGTT 
GTTAACGGTT AA
 
Protein sequence
MQQDTINNVH ISSEQVLVTP AELKQELPLS THAYQYILNA RKQVSDIVHK RDNRVLVVTG 
PCSIHDIAAA KEYALKLKKL HDELSDDFYI LMRVYFEKPR TTVGWKGLIN DPDMDESFDV 
EKGLRMAREL MIWLAELELP IATEALDPIS PQYLSELVTW SAIGARTTES QTHREMASGL 
SMPVGFKNGT DGKLEVAINA LKSAASSHRF MGINQEGQVS LLQTAGNPDG HIILRGGLAP 
NYDADSVAQS EAQIHKAKLS ARLVVDCSHG NSSKDHQRQK NVCEDVFNQI EAGNKSIIGV 
MLESNLNEGN QSSDKPLAEL KYGVSVTDAC IDWETTETIL RQGANQLSAV LPTRFETLQV 
VNG