Gene Sfri_2900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2900 
Symbol 
ID4279805 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3488660 
End bp3489613 
Gene Length954 bp 
Protein Length317 aa 
Translation table11 
GC content41% 
IMG OID638135720 
Producttransaldolase B 
Protein accessionYP_751578 
Protein GI114564064 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00874] transaldolase 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCAATG CACTCGCGCA ACTCAAATCA TTCACGACCA TCGTTGCTGA TACCGGCGAC 
ATAGAAGCTA TTAAACGTTA CCAGCCTGAA GATGCAACAA CCAACCCATC ACTCATTTTA
AAAGCCTCGC AGATCCCTGA ATATGCTTTT CTTATCGAGA ATGCTATCGA ATGGGCTAAA
ACCCAAAGCC ACAGTATTGA ACAACAGATT GAAGATGCAG GTGACAAGCT TGCTGTGAAT
ATTGGCGTAG AAATTTTAAA GCTAGTGCCA GGTCGTATCT CAACAGAAGT CGATGCTCGC
TTATCATTTG ACAAGCAACG CTCAATCGAC AAAGCGCACA AGCTAATCAA ATTATATAAA
GATGCCGGAA TTGATAAATC ACGTATTTTG ATCAAATTAG CTTCTACTTG GGAAGGTATT
TGCGCAGCAA AAGAACTTGA ACAAGAAGGC ATCAACTGTA ATCTAACATT GCTATTCAGC
TTTGCTCAAG CAAGAGCTTG TGCAGAAGCT GGCGTATACC TTATTTCGCC TTTTGTGGGT
CGCATCTTAG ATTGGTATAA AAAAGACACC GGTCAAGATT ACACTGCAGA AACCGATCCT
GGTGTTGTCT CTGTTACTGA GATTTACAAC TACTACAAGC AGAACGGTTA TAACACAGTT
GTTATGGGTG CAAGTTTCAG AAATATCGGT GAGATTATCG AATTAGCCGG TTGTGATCGT
CTAACGATTG GACCAGCATT GTTAGAAGAA TTAGCCAATA CTGATGTAGA AATTATCCAG
AAATTGGTTG CAACGCCAGC AACACAGTCT GCTCCAGCTG CGTTAACTGA AGAACAATTC
CGCTGGGTAT TTAACGAAGA CCCAATGGCA GTTGATAAGT TAGCAGAAGG CATTCGTAAT
TTTGCCATCG ATCAAGGCAA ACTAGAAGTT ATGCTAAAAA CAAAATTAAG CTAG
 
Protein sequence
MANALAQLKS FTTIVADTGD IEAIKRYQPE DATTNPSLIL KASQIPEYAF LIENAIEWAK 
TQSHSIEQQI EDAGDKLAVN IGVEILKLVP GRISTEVDAR LSFDKQRSID KAHKLIKLYK
DAGIDKSRIL IKLASTWEGI CAAKELEQEG INCNLTLLFS FAQARACAEA GVYLISPFVG
RILDWYKKDT GQDYTAETDP GVVSVTEIYN YYKQNGYNTV VMGASFRNIG EIIELAGCDR
LTIGPALLEE LANTDVEIIQ KLVATPATQS APAALTEEQF RWVFNEDPMA VDKLAEGIRN
FAIDQGKLEV MLKTKLS