| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2889 |
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| Symbol | lspA |
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| ID | 4279794 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3472465 |
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| End bp | 3472977 |
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| Gene Length | 513 bp |
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| Protein Length | 170 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638135709 |
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| Product | lipoprotein signal peptidase |
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| Protein accession | YP_751567 |
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| Protein GI | 114564053 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0597] Lipoprotein signal peptidase |
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| TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.0332011 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGTACTG TGCCATTAAC TTGGAAAGAC AGTGGCTTGC GTTGGTATTG GGTAGCTGCA
TTGGTGTTTT TAGCCGATCA GCTATCTAAA CAATGGGTCC TGAGCAATTT TGAATTGTAT
GAGTCTATAC AGCTTTTGCC GTTTTTTAAT TTCACTTACG TGCGAAATTA CGGTGCAGCA
TTCAGTTTTT TAAGTGAAGC TGGTGGGTGG CAACGTTGGT TGTTTACCAT TATTGCGGTC
GGTTTTAGTA CCTTGTTAAC AATATGGTTG CGCAAGCAAT CTTATTCGTT ATGGCGCAGT
AATTTAGCCT TTACCTTAGT CATAGGCGGC GCATTAGGTA ATTTGGTTGA TCGTTTAATG
CATGGTTTTG TAATCGACTT TGTCGATTTT TACTGGAATA CCAGTCATTA TCCTGCATTT
AATATTGCCG ATGCAGGCAT CTTTATTGGT GCGGTATTGA TCATTTGGGA ATCATTTAGA
CCCGACGCAA AGCCATCGAA GGAGCAAGAT TAA
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| Protein sequence | MSTVPLTWKD SGLRWYWVAA LVFLADQLSK QWVLSNFELY ESIQLLPFFN FTYVRNYGAA
FSFLSEAGGW QRWLFTIIAV GFSTLLTIWL RKQSYSLWRS NLAFTLVIGG ALGNLVDRLM
HGFVIDFVDF YWNTSHYPAF NIADAGIFIG AVLIIWESFR PDAKPSKEQD
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