Gene Sfri_2886 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2886 
Symbol 
ID4279791 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp3470214 
End bp3470762 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content36% 
IMG OID638135706 
Producttype IV pilus modification protein PilV 
Protein accessionYP_751564 
Protein GI114564050 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4967] Tfp pilus assembly protein PilV 
TIGRFAM ID[TIGR02523] type IV pilus modification protein PilV
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.313421 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCATGTA AAAGGAATGG ATTTTCCTTA ATTGAAGTAA TGGTATCACT GGTTATTCTA 
GTGATAGGCC TCATTGGGAT TTTTAATCTG CATATTATGT CAAAACAGGG CAGTTTTGAG 
TCTTTTCAGC AAACCCAAGC CTCGTATTTT GCTAATGATA TAATCAATCG TATGCGTCTA 
AATGTAAGTG AATTAAGCAA TTATGGATCG TCCTCCGGTA CTCACTATAG TGGAGAATCA 
TTAACAAAAC CCACAGAATG CTCTGGAGTT TATCGCTGTT CTAATACTGA ATTGAGAGCG 
TGGGATTTAT ATGAGTGGCA GAGTGCTTTT ATTGGCGATT CTGAAGTTGA TAGTGATGGC 
AGTATTGGAG GTTTACCTAC ACCAACAGCA TGTGTTTATG TTAATTCAAA TGATGTTGTA 
ATAGTCATGA CATGGAAGAG TGTTCGTAAG TTTAATGGTA CTAATGAGAA TTATTCTGAT 
GAAGTAAAAT CATGTGATTC TTCTGGTGCA ACGCGAAGAA TTTTTGAAGT TAAAACGGCA 
ATATTTTAA
 
Protein sequence
MPCKRNGFSL IEVMVSLVIL VIGLIGIFNL HIMSKQGSFE SFQQTQASYF ANDIINRMRL 
NVSELSNYGS SSGTHYSGES LTKPTECSGV YRCSNTELRA WDLYEWQSAF IGDSEVDSDG 
SIGGLPTPTA CVYVNSNDVV IVMTWKSVRK FNGTNENYSD EVKSCDSSGA TRRIFEVKTA 
IF