Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sfri_2882 |
Symbol | |
ID | 4279787 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella frigidimarina NCIMB 400 |
Kingdom | Bacteria |
Replicon accession | NC_008345 |
Strand | - |
Start bp | 3464671 |
End bp | 3465087 |
Gene Length | 417 bp |
Protein Length | 138 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 638135702 |
Product | methylation site containing protein |
Protein accession | YP_751560 |
Protein GI | 114564046 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4968] Tfp pilus assembly protein PilE |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGTAA CAATCACTAA AGCATACTCT GGTTTTACCT TAATAGAGGT AATGATTACC GTCGTCATTG TAGGGATTTT AGCTTCTATT GCATATCCTT CGTATACTAA ATTTGTTGCG AAGGGAGCTA GGGCTGACGC GCTAGCTGGT TTGATGAATG TGGCCAACAG GCAAGAACAA TATTATTTAG ATCATAAAAC GTTCACTAAA AATATGAAAA AACTTGGTTT TTCTGTTGAT GGTAATGGTA ATTTTGTTGT CGAGAATGGA TTTTATAAAA TAGATGCAAC TGTAGCTAAT GCTAATAGAT ATACTATAGA GGCTAAAGCT ATTGGTGTCC AAGCTACTCG AGATACAGAG TGTGCATCAA TAGAGATAAC TTCAGATGGG GTGAAAACAC CAAGTGACTG CTGGTAA
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Protein sequence | MKVTITKAYS GFTLIEVMIT VVIVGILASI AYPSYTKFVA KGARADALAG LMNVANRQEQ YYLDHKTFTK NMKKLGFSVD GNGNFVVENG FYKIDATVAN ANRYTIEAKA IGVQATRDTE CASIEITSDG VKTPSDCW
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