Gene Sfri_2882 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2882 
Symbol 
ID4279787 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand
Start bp3464671 
End bp3465087 
Gene Length417 bp 
Protein Length138 aa 
Translation table11 
GC content36% 
IMG OID638135702 
Productmethylation site containing protein 
Protein accessionYP_751560 
Protein GI114564046 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4968] Tfp pilus assembly protein PilE 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTAA CAATCACTAA AGCATACTCT GGTTTTACCT TAATAGAGGT AATGATTACC 
GTCGTCATTG TAGGGATTTT AGCTTCTATT GCATATCCTT CGTATACTAA ATTTGTTGCG
AAGGGAGCTA GGGCTGACGC GCTAGCTGGT TTGATGAATG TGGCCAACAG GCAAGAACAA
TATTATTTAG ATCATAAAAC GTTCACTAAA AATATGAAAA AACTTGGTTT TTCTGTTGAT
GGTAATGGTA ATTTTGTTGT CGAGAATGGA TTTTATAAAA TAGATGCAAC TGTAGCTAAT
GCTAATAGAT ATACTATAGA GGCTAAAGCT ATTGGTGTCC AAGCTACTCG AGATACAGAG
TGTGCATCAA TAGAGATAAC TTCAGATGGG GTGAAAACAC CAAGTGACTG CTGGTAA
 
Protein sequence
MKVTITKAYS GFTLIEVMIT VVIVGILASI AYPSYTKFVA KGARADALAG LMNVANRQEQ 
YYLDHKTFTK NMKKLGFSVD GNGNFVVENG FYKIDATVAN ANRYTIEAKA IGVQATRDTE
CASIEITSDG VKTPSDCW