| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2880 |
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| Symbol | |
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| ID | 4279785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3463119 |
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| End bp | 3463640 |
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| Gene Length | 522 bp |
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| Protein Length | 173 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 638135700 |
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| Product | prepilin-type cleavage/methylation-like protein |
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| Protein accession | YP_751558 |
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| Protein GI | 114564044 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4970] Tfp pilus assembly protein FimT |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAATT TTAACCGAGT TAAAGGCTTT GGTCTTATTG AAGTTATCGT TGTGACACTC
ATTGTAATGT TAATGTCACT TATTGCAATT CCATCATTCA AATCTGTTAA TGAACAAGTC
AGAGCAAAAA GCAATATAAT AACTATTCAG CAATCGATGC AGTTTGCACG CAATATGGCT
ATCAATTACG GAAGAAGAGT GACGGTTTGT AATCTCGAGG ATAACAATTG CACTAAGCAA
TGGCATAAGG GATATACAGT TTTTCTCGAT GGTTCACAAA AAAATGAACT ATCTGCTGAT
GATGTTATTT TACTTCAAAT ACCTTCTTTT AATGCAAATG ACACGGTTTA CTATAATAGA
ACATCAGTAA GGTTCCAACC TGATGGTCTA GCGTCAGGAA CCAATGGTAC ATTTAGGTAC
TGTCCTAATT CAATTGATAG CCCTTACTCG AAAGCAGTAA TAATTAATCA ATCTGGCAGA
GTACGCTTTT CAAAGAAAAA GGTAACATGT AAAAAAAGGT AA
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| Protein sequence | MTNFNRVKGF GLIEVIVVTL IVMLMSLIAI PSFKSVNEQV RAKSNIITIQ QSMQFARNMA
INYGRRVTVC NLEDNNCTKQ WHKGYTVFLD GSQKNELSAD DVILLQIPSF NANDTVYYNR
TSVRFQPDGL ASGTNGTFRY CPNSIDSPYS KAVIINQSGR VRFSKKKVTC KKR
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