| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2866 |
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| Symbol | |
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| ID | 4279771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3447758 |
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| End bp | 3448897 |
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| Gene Length | 1140 bp |
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| Protein Length | 379 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135684 |
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| Product | putative oxygen-independent coproporphyrinogen III oxidase |
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| Protein accession | YP_751544 |
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| Protein GI | 114564030 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
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| TIGRFAM ID | [TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00010545 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACATTGC AACTACCACC TCTTAGCTTG TATATCCATA TTCCTTGGTG CGTGCAAAAA
TGCCCTTATT GCGATTTTAA CTCTCATGGC CAAAATGGTG AGTTACCACA GCAACAATAT
GTCGATGCGT TACTGGACGA TTTAAAACAA GACTTGGCTT ATGTTCAAGG TAGAAAGGTG
CATACCATCT TTATCGGCGG TGGCACGCCA TCGTTATTTG ACGCTAGCCA AATTCAACGC
ATACTTGAAG GCGCACAAGC ATTAATCCCT TTTGAAGATA ATATTGAAAT CACCATGGAA
GCCAATCCAG GTACATTAGA GCACGACGAC TTTAGTGCCT ATCGTGCTGC GGGTGTCACG
CGCTTATCTA TTGGGGTGCA AAGTTTTTCA AAAGAAAAAC TTAATCTGCT AGGACGTATC
CACAATGAAG ATGAAGCTAA AGTGGCGGCT GAAAAAGCCA AACAAGCAGA TTATTTAAGT
TTTAATCTCG ACTTAATGCA CGGTTTACCA AACCAAAGCT TTGACGAAGC CATGCATGAT
ATCGACACAG CAACAGCTTT AGCCCCACCG CATCTTTCTT GGTATCAACT CACCATTGAA
CCCAACACCT TGTTTCATTC AAAACCGCCA CAATTACCAG ATGATGAGAA CCTGTGGCAA
ATTTACGAGC AAGGTCAGCA GCGCTTAGCG GCATTAGGTT ATGAGCAATA CGAAATATCG
GCCTATGCCA AACCGGGATA CCAATGTCGC CATAATCTTA ATTACTGGCA GTTTGGCGAC
TACCTTGGCA TCGGTTGCGG TGCCCACGGT AAGATCACTC TCCCCGACTC AAATCGGATT
GTGCGCACCG TAAAAATAAA ACACCCTAAG GGCTACCTCG CTGCGGATAA ATATACCTTT
GAAACGACAG ATGTCGTTGA AGAAGACCGT CCATTAGAAT ACTTAATGAA CCGCCTAAGA
TTGATGACTC CAATCCCTAA AACCGAATTT GAGCAACGTA CAGGTCAATC GGCCGAGGTG
GTAAAGCTGG GAATGCAAAA ATCAATTGAA CGGGGATTAT TGACAGAAAC CAAAACACAT
TGGCAATTGA CCTCTAAAGG CCACATGTTT GTAAATGATT TGCTGTCTCA ATTTATTTAA
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| Protein sequence | MTLQLPPLSL YIHIPWCVQK CPYCDFNSHG QNGELPQQQY VDALLDDLKQ DLAYVQGRKV
HTIFIGGGTP SLFDASQIQR ILEGAQALIP FEDNIEITME ANPGTLEHDD FSAYRAAGVT
RLSIGVQSFS KEKLNLLGRI HNEDEAKVAA EKAKQADYLS FNLDLMHGLP NQSFDEAMHD
IDTATALAPP HLSWYQLTIE PNTLFHSKPP QLPDDENLWQ IYEQGQQRLA ALGYEQYEIS
AYAKPGYQCR HNLNYWQFGD YLGIGCGAHG KITLPDSNRI VRTVKIKHPK GYLAADKYTF
ETTDVVEEDR PLEYLMNRLR LMTPIPKTEF EQRTGQSAEV VKLGMQKSIE RGLLTETKTH
WQLTSKGHMF VNDLLSQFI
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