| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2859 |
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| Symbol | |
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| ID | 4279764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3442325 |
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| End bp | 3443362 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 638135677 |
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| Product | twitching motility protein |
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| Protein accession | YP_751537 |
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| Protein GI | 114564023 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00311104 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAATCA CTGAATTACT CGCCTTTAGT GTAAAACACA AAGCATCAGA TCTACATCTT
TCAGCAGGCG TTTCTCCTAT GATCCGCGTT GACGGTGAGG TAAGGAAAAT TAATTTACCT
GCGTTAGATC ATCAAGGCGT TCATAGTCTC GTGTATGACA TCATGAATGA TAAACAACGT
AAAGACTATG AAGAACATCT AGAAATCGAT TTTTCATTCG AAGTGCCTAA TCTGGCGCGT
TTTCGTGTTA ACGCATTTAA TCAGTCCCGT GGCGCTGGCG CGGTATTCCG TACCATTCCT
TCTGAAATCT TGTCTCTTGA GCAACTTGGC GCACCAGAAA TATTTAAAAA AATCGCCAGT
TATCCACGTG GATTAGTATT AGTAACCGGG CCTACCGGTT CGGGTAAATC AACCACATTG
GCTGCGATGG TCGATTATGT TAATGAAAAT CGACATGACC ATATTTTAAC CATTGAAGAC
CCGATAGAAT TCGTTCATCA GAACAAACAA TGCTTAATCA ACCAGCGTGA AGTACACAAA
CACACACACA GCTTTAATGC AGCCCTAAGA AGTGCACTAC GTGAAGATCC AGATGTTATT
CTTGTGGGTG AAATGCGCGA CCTTGAAACC ATTCGTTTAG CCATGACCGC CGCTGAAACG
GGTCACTTAG TATTTGGTAC TTTGCATACC ACCTCAGCCG CAAAAACCAT TGACCGTGTG
GTCGATGTAT TCCCAGAAGG TGAAAAGAGC ATGGTTCGCA CCATGCTGTC TGAGTCACTT
CAGGCGGTTA TTTCACAAAC ATTGATCAAG AAAATAGGCG GTGGCCGAGT GGCCGCTCAT
GAAATTATGA TGGGTACACC AGCGATTCGA AATCTTATTC GTGAAGATAA AGTTGCACAA
ATGTATTCAG CTATTCAAAC GGGTATGTCT CACGGTATGC AAACTCTGGA TCAATGTCTG
CAAAACTTAG TCAATCGTGG GTTAATTACC CGTGAAGATG CGATGCAGAA GAGTTCGAAT
AAACAAGCTA ATTTCTAA
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| Protein sequence | MEITELLAFS VKHKASDLHL SAGVSPMIRV DGEVRKINLP ALDHQGVHSL VYDIMNDKQR
KDYEEHLEID FSFEVPNLAR FRVNAFNQSR GAGAVFRTIP SEILSLEQLG APEIFKKIAS
YPRGLVLVTG PTGSGKSTTL AAMVDYVNEN RHDHILTIED PIEFVHQNKQ CLINQREVHK
HTHSFNAALR SALREDPDVI LVGEMRDLET IRLAMTAAET GHLVFGTLHT TSAAKTIDRV
VDVFPEGEKS MVRTMLSESL QAVISQTLIK KIGGGRVAAH EIMMGTPAIR NLIREDKVAQ
MYSAIQTGMS HGMQTLDQCL QNLVNRGLIT REDAMQKSSN KQANF
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