Gene Sfri_2827 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2827 
Symbol 
ID4279732 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand- 
Start bp3408967 
End bp3409515 
Gene Length549 bp 
Protein Length182 aa 
Translation table11 
GC content37% 
IMG OID638135645 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_751505 
Protein GI114563991 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTCA TTGATACAAT CATTGCGGAC GTTAAAATCA TCGAACCAGC AGTCTTTGGG 
GATGAACGGG GTTTCTTTAT GGAAACGTGG AGTCAGCAAA AATTTGAAGA ACTTGTAACG 
GGTAAACCTA CAAAGTTTGT TCAGGATAAT CACTCTAAAT CCAAGAAAGG GATTTTACGT 
GGTTTGCATT ATCAGACTAA AAATACCCAA GGTAAATTAG TACGTGTGGT GTCTGGTGAA 
GTATTTGATG TTGCTGTTGA TATAAGAAAG GGGTCTCCTA CATTTGGCCA ATGGGTCGGT 
GTGTATTTAT CTGCAGAAAA TAAACGTCAG TTATGGGTGC CTGAAGGTTT TGCCCATGGT 
TTCTATGTAA CGAGCGAAGA AGCTGAATTT GTATATAAGT GTACTGATTA TTATAATCCT 
AAGGCTGAAC TATCCATTGC CTGGAATGAC AGTGATATAG GTATTAAATG GCCAATTAGT 
AATACACCAC TATTATCTGA AAAAGATAAG TTTGGAATAA AAATCATAGA TATGGTTGGT 
TTAATATGA
 
Protein sequence
MKVIDTIIAD VKIIEPAVFG DERGFFMETW SQQKFEELVT GKPTKFVQDN HSKSKKGILR 
GLHYQTKNTQ GKLVRVVSGE VFDVAVDIRK GSPTFGQWVG VYLSAENKRQ LWVPEGFAHG 
FYVTSEEAEF VYKCTDYYNP KAELSIAWND SDIGIKWPIS NTPLLSEKDK FGIKIIDMVG 
LI