| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2797 |
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| Symbol | |
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| ID | 4279703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | - |
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| Start bp | 3366158 |
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| End bp | 3369220 |
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| Gene Length | 3063 bp |
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| Protein Length | 1020 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638135616 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_751476 |
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| Protein GI | 114563962 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAGTC TAAATGTTTT TTTCTCAATT TTAGAAAATG CAGCGCTATT ACTCGCGCTA
GTTTATGTTT ACTCACTCTC TCCTACGCAT CAACGTAAGG TGGCGCCTTT TTTATGGCAA
TTTTTAATGG GTGCTGTTAT TGGCACTATT GGCGTTGTTA TTATGATGGA TCCCTTGGTT
CATCAACAGG ACATATTGTT TGATGCTCGC ACGGTCGTAC TCTGTTTAAG TGGTCTATTT
TTTGGCGGAA TTCCAACTCT TGTCGCAACG ATTATCATGG CGCTTTATCG TTATCATTTG
GGCGGGGTTG CAGTATGGGT TGGTATATGT GCGTTAAGCA GTAGTGCACT AATCGGATTA
ATATGGCGTC GATATCGTCG GCATGAATTG GATCAAATTA GTTATCGTGA ATTTTACCTT
CTTGGCGTTA TTGTTCATTC CCTATTGCTA TTATGGCTAT TTTTATTGCC GTTTGATCAA
GCGTTAGATG CTCTGCGTAC CGTGTCACTT CCTATTATGA TGGTGTTACC TTTATTGACT
ATGATCATCG GTCATTTACT TGCCAAAATA GTGTTTCGTG GGCGCGATAT ACAAGTCAAA
TTACAAGAGG ATTTTCTTTT TAACAATCAA TTTGATATTG GCAACATTGG TATTTCTATT
ACCACTAAAA CTAAGCATTG GTTGAGAGTT AACCCCTATT TATGTCGAAT GTTCGGTTAC
AGCGAAAATG AATTAAAGGC GTTAACGTGG GCTGAATTAA CACACCCAGA TGATTTGAAT
AAAGATTTAT TATTATTTGA GAAAATGGTT AAAGGCGAAC TCAATGAATA CGAAATTGAT
AAGCGTTTTA TTGCTAAAGA TGGTTCGGTC ATTTATACCC ATGTGACTAT TGCCTGCCGC
CGTCATGTTC AAGACAATAC TTTTCTGGTG ATTGCCGGTT TTCTCGATAT CACTCATCAG
AAACAAGCCG AGCAAGATTT ATTACAAAGT AACGAACAGC TTGCGCTAGT ACTTGATAGC
AGTGAGCTAG GAGTGTGGGA CTGGGATGTA CAACACAATC GTATTAGTAC TAATCGATAC
AGTGCTGACA TTTTAGGTTG TTCAATGGAA GAGCTTAATC TACACCCTAA ACTATGGATA
AATGCGATAC AGCTAAAAGA TAAATTTAAG TTTCTTCGCA GCATTAATGA AATTGTAAAA
GGCCGCTGCA TAAGCCAACG TGTAGAATAT CAATTAACTA ACATGGACGG CGACAGTCGA
TGGATTTTGC AAACTGGAAG GGTCGTTGAT GTTGATGATA AAGGTAAACC GCTTAGAGTG
TGTGGCACTC ATAGCGATAT TACTGATATC AAGCAGGTTG AAGATTCGCT AAGTATTGCA
GCATCTGTAT ATCAAAACTC CAGTGAAGCC ATGAGTGTGT TTACTGCAAA GGGCATTATC
ATTGATTCAA ATCCTGCATT TTCTTTTATC ACTGGATTCA GTCAACAAGA CATACAAGAT
CAGCATTTAC GTATGTTTGA AACAGATCTT CAACCCCAAC ATTTTTATCA ACAATTAAGC
CAACAGCTTA GTCAGCAGGG ACATTGGCAT GGTGAAGTGT GGATGCGCCG TAAAAATGGT
GAAAATTACC TTATCTTATT AACCATTAAT TCAATCATCC GAACAAAGTC GCAGGGTGCG
CGATTTGTTG CGTTATTTTC CGATATTACC GAGAAAAAGC AAACTGAAGA GTTGATATGG
CGCCAGGCTA ATTATGATGC ACTCACCGGT TTGCCAAATC GTAGGATGTT GTTAACATTT
TTGAATCAAG AAGTATTTCA TTCTGACCGA CAGCATAATC ACTTTGCATT GATGTTTTTA
GACCTGGATT ATTTTAAAGA GATTAACGAC ACGTTGGGCC ATGATATGGG GGATGTATTG
TTAATTGAGA CGGCGGAACG TCTAAAAAAT TGCGTGCGCG AAACCGATGT TGTTGCCCGT
CTTGGTGGTG ATGAATTTAC CATAGTGTTA ACTAACCTTG AAGATACTCA TGGAGTCGAA
CGTGTTGCAC AACAAATACT TAAAAGACTT TCCGAGCCTT ATTTATTAGG TGATCAAACG
GCCTATATTA GTGGCAGTAT TGGTATTACT TTATTTCCAG ACGATGCCAA AACAACCGAA
GCATTATTAA AGAATGCCGA TCAAGCCATG TATTCGGCAA AATCCCATGG TCGTAATCGG
TTTAATTATT TTACCTCCGC AATGCAAGAC AATGCACAAA AGCGAATGTC GTTGATTCAA
GACCTTAAAG TGGCGATTAT CCAGCAGCAA TTTGAGTTGT ATTATCAGCC TATTGTGGAT
TTAAGCCGTC AGCAGATCAT CAAGGTTGAA GCGTTAATAC GTTGGAACCA TCCAACCATG
GGGTTAATCC CACCTGCAGA TTTTATCTCT ATTGCTGAAG AGACAGGGAT GATAATCGAC
ATTGGTAATT GGGCTTTTTA TCAAGCCTGC GAACAAGCCG CTAAATGGAA GACACAATTT
AATCATCATA TTCAAATTAG TATTAATATG TCACCTGTAC AGTTTAAAGA CGAGTCGACC
GATGTTGAGA ATTGGTTTAA ACAGATGTCT TTGCTCGCGC TGCCAACCAA TAGCATTTGT
ATTGAGATCA CTGAAAGTTT ACTGCATGAC ATTGAACCTA ATGTTGAGGC TAAATTACAG
GCTTATGGTA ATGCTGGTAT GCAATTGTCG CTTGACGATT TTGGTACTGG TTATTCATCC
TTACCTTATT TAACCAAATA TAATGTTGAT TACCTTAAGA TAGACAAATC TTTTGTGGGT
CGTTTGGCTG CCAAAAATAA TGATATGTGT TTGTGTGAAG CCATTATCGC AATGGCGCAT
AAACTCGGCA TCAAAGTCAT TGCTGAAGGT ATTGAAACCG AAAGTCAACG GCGTTTATTG
GCGTTTGCTG GCTGTGATTA TGGCCAAGGA TATTTATTTT CGCATGCCTT GTGCCGTGAT
GATTTTGAAC AAAAGTATTT AGTGGAGAAA GCAATACCAT TGCAGGCTAG TCAGCAGATA
TAA
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| Protein sequence | MFSLNVFFSI LENAALLLAL VYVYSLSPTH QRKVAPFLWQ FLMGAVIGTI GVVIMMDPLV
HQQDILFDAR TVVLCLSGLF FGGIPTLVAT IIMALYRYHL GGVAVWVGIC ALSSSALIGL
IWRRYRRHEL DQISYREFYL LGVIVHSLLL LWLFLLPFDQ ALDALRTVSL PIMMVLPLLT
MIIGHLLAKI VFRGRDIQVK LQEDFLFNNQ FDIGNIGISI TTKTKHWLRV NPYLCRMFGY
SENELKALTW AELTHPDDLN KDLLLFEKMV KGELNEYEID KRFIAKDGSV IYTHVTIACR
RHVQDNTFLV IAGFLDITHQ KQAEQDLLQS NEQLALVLDS SELGVWDWDV QHNRISTNRY
SADILGCSME ELNLHPKLWI NAIQLKDKFK FLRSINEIVK GRCISQRVEY QLTNMDGDSR
WILQTGRVVD VDDKGKPLRV CGTHSDITDI KQVEDSLSIA ASVYQNSSEA MSVFTAKGII
IDSNPAFSFI TGFSQQDIQD QHLRMFETDL QPQHFYQQLS QQLSQQGHWH GEVWMRRKNG
ENYLILLTIN SIIRTKSQGA RFVALFSDIT EKKQTEELIW RQANYDALTG LPNRRMLLTF
LNQEVFHSDR QHNHFALMFL DLDYFKEIND TLGHDMGDVL LIETAERLKN CVRETDVVAR
LGGDEFTIVL TNLEDTHGVE RVAQQILKRL SEPYLLGDQT AYISGSIGIT LFPDDAKTTE
ALLKNADQAM YSAKSHGRNR FNYFTSAMQD NAQKRMSLIQ DLKVAIIQQQ FELYYQPIVD
LSRQQIIKVE ALIRWNHPTM GLIPPADFIS IAEETGMIID IGNWAFYQAC EQAAKWKTQF
NHHIQISINM SPVQFKDEST DVENWFKQMS LLALPTNSIC IEITESLLHD IEPNVEAKLQ
AYGNAGMQLS LDDFGTGYSS LPYLTKYNVD YLKIDKSFVG RLAAKNNDMC LCEAIIAMAH
KLGIKVIAEG IETESQRRLL AFAGCDYGQG YLFSHALCRD DFEQKYLVEK AIPLQASQQI
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