Gene Sfri_2790 details

Gene Information

• Locus tag: Sfri_2790
• ID: 4279696
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: +
• Start bp: 3354902
• End bp: 3356767
• Gene Length: 1866 bp
• Protein Length: 621 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 638135609
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_751469
• Protein GI: 114563955
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00619282
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTTCG ATATTTCTAA ATTTCCAGTA CTAGCGAAAG CTAATACACC AGAAGAATTA 
AGGAAGTTAC CTCAAGGTTT ACTTCCACAA GTGTCTGATG AACTCAGACA GTTCTTACTT 
CAGTCTGTTG CTATTTCTAG CGGACATTTT GCTTCTGGCC TAGGCACAGT TGAATTAACT 
GTGGCACTTC ATTATGTCTA CAATACCCCT TTTGATCAGT TAGTTTGGGA TGTAGGGCAT 
CAAGCTTATC CACATAAAAT CCTTACCGAT CGTCGTGAAC AGATGCACAC CATTCGACAA 
AAGAATGGCT TACATCCTTT CCCATGGCGT GAAGAAAGCC CATACGATAC GTTTAGCGTG 
GGTCACTCTG GTACCTCTGT TAGTGCCGCA TTAGGCATGG CGATTGCGGC AGGGAAAGAA 
GGTGTTGGTC GAAAAGTGGT TGCTGTGATT GGTGATGGTG CCATGACAGG GGGAATGGTA 
TTTGAAGCCC TCAATCATGC TGGCGACTTG CACAATGATA TGCTCGTGGT ACTGAATGAC 
AATGAAATGT CGATTTCTGA AAATGTTGGC GCACTGAATA ATCATTTGGC GCAACTGATG 
TCAGGTCGTT TTTATACCAC CATTCGAGAA AACAGTAAAA AGGTCCTTAA AGGGATGCCT 
GTCATTAAAG AAATGGCTAA GCGTACTGAA GAACACCTTA AAGGCATGGT TGTACCTGCA 
ACGCTTTTTG AAGAGTTAGG GTTTAATTAT ATTGGCCCAA TAGATGGCCA TGATGTTGAT 
TCGCTCGTTG AAACCATGCG TAATATGCGC AACCTCAAGG GTCCACAGAT ACTGCATATC 
ATGACCAAAA AAGGTCGTGG TTACGAACCT GCTGAAAAAG ATCCTATCGG TTGGCACGCG 
GTGCCTAAGT TTGATCCCAG CCAGTTTAAG AAACCGACAA CTAAACCAGG TTTGCCTACG 
TTTTCACAAG TATTTGGTAA ATGGTTATGC GACATGGCCG CAACAGACGA CAAGTTAGTC 
GCTATTACGC CCGCTATGCG TGAAGGCTCA GGTATGGTTG AATTTTCACA ACGATTCCCA 
AGCCAATATT TTGATGCTGC CATTGCCGAA CAGCATGCAG TTACATTAGC AGCAGGTTTT 
GCCTGTGCAG GACTAAAGCC TGTAGTCGCT ATTTATTCAA CTTTTTTACA GCGCGGATAC 
GATCAACTTA TCCATGATGT GGCTTTACAA CGTTTACCAG TATTATTCGC CATTGACCGT 
GGTGGCATTG TTGGTGCAGA TGGCCCAACT CATCAAGGTG CATTCGATTT AAGCTTTATG 
CGCTGTATTC CGAATATGAT TATTATGGCG CCATCAGATG AAAATGAATG TCGCCAAATG 
CTCTATACCG GTTATTGCTA TCAAGATGGG CCGACTGCAG TACGTTACCC TCGTGGTTTT 
GCTACAGGGG CAGAACAAAT TGACACCATG ACGATGATAC CCATTGGTAA AGGGGTGTTA 
ACCCGTCAAG GTCAAAAAAT TGCCATTGTA AACTTTGGTA CCACACTAGA GGCTGCTACC 
GATGCAGCTG AAAAACTGGA TGCAACCATT GCCGATATGC GCTTTGTTAA GCCACTAGAT 
TTAGGCTTGC TTGAACAACT TGCCAATAGC CATGATGTTA TCGTTACCGT TGAAGAAAAC 
GCGATTATGG GCGGTGCAGG CTCAGGAGTG ATTGAAGCAT TACACAAAAT GCGGATTGTG 
AAACCTGTGT TACAGATTGG TTTACCTGAT GAGTTTATTA AACACGGTGC ACCTGATGAA 
ATCACCGCAG AGTTGCAACT TGATGCCCAG GGTATTTTGG CGCAAATCCA AGCCTTTATG 
GCTTAA 

 

Protein sequence

MSFDISKFPV LAKANTPEEL RKLPQGLLPQ VSDELRQFLL QSVAISSGHF ASGLGTVELT 
VALHYVYNTP FDQLVWDVGH QAYPHKILTD RREQMHTIRQ KNGLHPFPWR EESPYDTFSV 
GHSGTSVSAA LGMAIAAGKE GVGRKVVAVI GDGAMTGGMV FEALNHAGDL HNDMLVVLND 
NEMSISENVG ALNNHLAQLM SGRFYTTIRE NSKKVLKGMP VIKEMAKRTE EHLKGMVVPA 
TLFEELGFNY IGPIDGHDVD SLVETMRNMR NLKGPQILHI MTKKGRGYEP AEKDPIGWHA 
VPKFDPSQFK KPTTKPGLPT FSQVFGKWLC DMAATDDKLV AITPAMREGS GMVEFSQRFP 
SQYFDAAIAE QHAVTLAAGF ACAGLKPVVA IYSTFLQRGY DQLIHDVALQ RLPVLFAIDR 
GGIVGADGPT HQGAFDLSFM RCIPNMIIMA PSDENECRQM LYTGYCYQDG PTAVRYPRGF 
ATGAEQIDTM TMIPIGKGVL TRQGQKIAIV NFGTTLEAAT DAAEKLDATI ADMRFVKPLD 
LGLLEQLANS HDVIVTVEEN AIMGGAGSGV IEALHKMRIV KPVLQIGLPD EFIKHGAPDE 
ITAELQLDAQ GILAQIQAFM A