| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2782 |
|---|
| Symbol | |
|---|
| ID | 4279688 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3347670 |
|---|
| End bp | 3348380 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638135601 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_751461 |
|---|
| Protein GI | 114563947 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3571] Predicted hydrolase of the alpha/beta-hydrolase fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0438432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGTTGCT TACCGGATAA TACGCCAGTG TTAGCTGATG ATTTTCTTTT GCAAGGTCCT
AAAAGTGACA CTTTGATTGT TTTTGCTCAT GGTGCTGGGG CGAATATGCA TCATCAATAT
ATGACTTCGA TGACCGATAA GTTAATCGCT CAAGGCTATC AAGTGTACCG ATTTAATTTC
TTGTATATGC AGGCCAATAT GCAAGATGGT AAACGCCGTC CGCCTGATCG AGCACCTAAA
TTACTCGCGC ACTATGAACA GGTGCTGCTA GATATTCAAC AAAAAATGAC GCTGGGTCTT
ATTAATTGTC AGCGAATAAT CTTAATGGGC AAGTCAATGG GTGGCCGTAT GTCGGCAATA
TTGACCAGCT CAGACCATCA ATTACAACAA CCTCTTGTTA AAGATGTTGC CAATAAAATT
AGTGCAATTG TGTGTTTAGG CTACCCTTTT ATTCCCCTCA AAGGTGGAGA ACCACGACTT
GCGCCTATTC AGCACAATTC AATTCCGATG TTGATTGTTC AAGGTGAGCG AGATAAATTT
GGCGATCTTC AACAAGTACC CAATTGGGCT TTGGGTGAAC ATGCAGAAGT CTGTTGGATT
GGTGATGGTG ACCATAGTTT GCAACCGCGA AAATCTTCTG GTTATACCCT TGAGGGCAAT
CTTGATCATG CCATCGAGAA TATTAGTCAG TTTATTACCC GATTAGGTTA A
|
|---|
| Protein sequence | MSCLPDNTPV LADDFLLQGP KSDTLIVFAH GAGANMHHQY MTSMTDKLIA QGYQVYRFNF
LYMQANMQDG KRRPPDRAPK LLAHYEQVLL DIQQKMTLGL INCQRIILMG KSMGGRMSAI
LTSSDHQLQQ PLVKDVANKI SAIVCLGYPF IPLKGGEPRL APIQHNSIPM LIVQGERDKF
GDLQQVPNWA LGEHAEVCWI GDGDHSLQPR KSSGYTLEGN LDHAIENISQ FITRLG
|
|---|
| |