Gene Sfri_2779 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2779 
Symbol 
ID4279685 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp3344816 
End bp3345826 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content44% 
IMG OID638135598 
Productisocitrate dehydrogenase 
Protein accessionYP_751458 
Protein GI114563944 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR00175] isocitrate dehydrogenase, NAD-dependent, mitochondrial type
[TIGR00183] isocitrate dehydrogenase, NADP-dependent, prokaryotic type
[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAAAAC GTACAATAAC CGTGATCCCA GGTGATGGGA TTGGCCCAAG CATTATCGAT 
TCAGCATTAA AAATCCTCGA TAAAGCAGGA TGTAACTTTG AATATGAATT TGCTGATGCA 
GGGTTAACGG CGTTAGAAAA ACACGGTGAA TTAGTACCGC AACGTACTTT AGACCTTATC 
GAGAAAAATC GCATTACGCT TAAAGGACCA TTAACCACAC CTGTCGGTGA AGGTTTTACC 
TCTATTAATG TGAGCTTACG TAAAAAGTTC AGCCTTTATG CTAACGTGCG CCCGGTGATT 
TCATTTAAGG GAACCCAAGC GCGTTACGAG AACATTGATA TTATTACCGT CCGTGAAAAC 
ACTGAAGGTA TGTACTCAGG CTTAGGCCAA AAAATCTCTG ACGATGGTCA AACAGCCGAA 
GCAACCAGTA TCATTACTCG TCAAGGTGCA GAGCAAATCA CCACGTTCGC ATACGAACTT 
GCACGTAAAG AAAATCGTAA AAAAGTGACT ATCGTTCATA AAGCTAACAT CATGAAATCA 
ACTTCAGGTT TATTCTTGAA AGTGGCACGT GAAGTGAGCC TGCGTTACCC AGACATCACC 
ACCGAAGAAA TGATTGTTGA TGCCACTTGT ATGAAACTGG TTATGAATCC TGAAAACTTT 
GATGTTATCG TGACCACTAA CCTATTTGGC GACATTTTGT CTGACTTATG TGCCGGTCTT 
GTAGGCGGTT TAGGCATGGC TCCAGGTGCA AACATCGGTC GCGATGCTGC TATATTTGAA 
GCGGTACACG GCAGTGCACC AGATATCGCA GGTAAAAACT TAGCTAACCC GACCTCGGTA 
ATTTTAGCGT CGATTCAAAT GCTAGAATAC CTAGGTATGT CTGATAAAGC TGAGATGATC 
CGTAGCGCAG TATCGGCTGT TATTGAAGAA GGCGACCGTA CGACTCGCGA TTTAGGCGGC 
ACTCACGGCA CTACCGACTT CACTCAAGCG GTACTCGATC GTCTAGGATA A
 
Protein sequence
MSKRTITVIP GDGIGPSIID SALKILDKAG CNFEYEFADA GLTALEKHGE LVPQRTLDLI 
EKNRITLKGP LTTPVGEGFT SINVSLRKKF SLYANVRPVI SFKGTQARYE NIDIITVREN 
TEGMYSGLGQ KISDDGQTAE ATSIITRQGA EQITTFAYEL ARKENRKKVT IVHKANIMKS 
TSGLFLKVAR EVSLRYPDIT TEEMIVDATC MKLVMNPENF DVIVTTNLFG DILSDLCAGL 
VGGLGMAPGA NIGRDAAIFE AVHGSAPDIA GKNLANPTSV ILASIQMLEY LGMSDKAEMI 
RSAVSAVIEE GDRTTRDLGG THGTTDFTQA VLDRLG