Gene Sfri_2759 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSfri_2759 
Symbol 
ID4279665 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella frigidimarina NCIMB 400 
KingdomBacteria 
Replicon accessionNC_008345 
Strand+ 
Start bp3315916 
End bp3316485 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content40% 
IMG OID638135578 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_751438 
Protein GI114563924 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.302913 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATATA TTAACACTCA CCTCGAAGGC GTGATGATTT TTAGTCCACG TAAGTTCATT 
GATGAACGCG GTTTTTTTAT GGAAACATTA CGTCAAAATA GCTTTAGTGA TGCATTTATC 
CAAAACAAAA TGGATGTCCC TCTGCTCGTT CAAGAGAATC AATCTCGCTC GGTGAACAAT 
GTTTTACGCG GACTGCATTT TCAGCAGCAC TTTCCTCAGG GTAAATTAAT CCGTGTGGCC 
AGAGGTACTA TCTTTGACGT TGCTGTCGAT ATTCGTCAAG AGTCTAAAAC ATTTGGCCAG 
TGGATAGGTC AGGAAATTTC CGACGAAAAT GGCTATCAAA TGTGGATCCC GGCAGGATTT 
GCACACGGCT TTTACGTATT GTCTGACATC GCTGATATTA TTTATAAATG TTCACAATAT 
TATCAACCAG ACGATGAGCA AACCATCGCA TGGAATGACC CTATGCTCAA TATACAATGG 
CCTTTAAAAC AGCACCCTGC TCCTATCGTC TCAGACAAAG ATAATCCGAC CATAAACCCT 
AAGATAATCT CATTTGGTCT CATGAAATGA
 
Protein sequence
MKYINTHLEG VMIFSPRKFI DERGFFMETL RQNSFSDAFI QNKMDVPLLV QENQSRSVNN 
VLRGLHFQQH FPQGKLIRVA RGTIFDVAVD IRQESKTFGQ WIGQEISDEN GYQMWIPAGF 
AHGFYVLSDI ADIIYKCSQY YQPDDEQTIA WNDPMLNIQW PLKQHPAPIV SDKDNPTINP 
KIISFGLMK