| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2753 |
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| Symbol | |
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| ID | 4279659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3308026 |
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| End bp | 3309741 |
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| Gene Length | 1716 bp |
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| Protein Length | 571 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638135572 |
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| Product | prolyl-tRNA synthetase |
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| Protein accession | YP_751432 |
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| Protein GI | 114563918 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0442] Prolyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00193635 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAGTTA GCAAGTACCT GCTTTCAACA CAAAAAGAAA CCCCTGCTAA TGCAGAGGTG
ATTAGTCATC AGTTAATGTT ACGAGCCGGT ATGATCCGTC GTAATGCTTC AGGTCTCTAC
ACTTGGCTTC CATCTGGTTT ACGTGTTTTA CGTAAAGTTG AAGCCATTGT TCGTGAAGAA
ATGAACAAAA CAGGTGCGAT CGAAATATTA ATGCCGTTAG TCCAGCCTGC AGATCTATGG
GTTGAAACGG GTCGTTGGGA TAAGTTTGGT CCTGAGTTAT TACGTTTCCA AGACCGTAAT
AATCGTGACT TCGTATTGGG GCCAACCCAT GAAGAAGTGA TCACCGATTT AGTCCGTAAA
GAATTAAGTT CTTACAAGCA ACTACCGCTA ACACTTTACC AAGTACAAAC TAAGTTCCGT
GATGAAGTTC GCCCTCGCTT CGGCGTCATG CGCGCGCGCG AATTCTTGAT GAAAGATGCC
TATTCTTTCC ATTTAGATCA AGAAACCATG GATAACACTT ACCACGCTAT GCATACCGCA
TACAGCAATA TTCTGACTCG TATGGGCTTA TCATTCCGTC CAGTACTGGC TGATACTGGT
TCTATCGGTG GTAGCATGTC GCATGAATTC CATGTGCTGG CTAACAGTGG TGAAGATTTA
ATCGCTTATT CAACGGGTAG CGATTATGCC GCTAACATTG AAAAAGCCGA ATCACCAATG
CCAACTCACA CTCTTGCTGC ACCGACTGAA GCAATGACGT TAGTGGATAC GCCTAACGCC
AAAACGATTG CTGAGTTAGT TGAGCAATTT AATGTAGTCA TCACTAAAAC GGTTAAAACC
TTAATCGTAA AAGGTGCTAC TGACGAAGTG CCATTAGTTG CATTAGTTAT CCGTGGCGAT
CACGAACTTA ACGAAATTAA AGCCGACAAG CTTGAATTAG TCGCATCACC ATTTGAATTT
GCTTCAGAAA CAGAAATTCG TGCTGCAGTT GGAGCAGGTC CTGGTTCTAT AGGACCTGTT
GGCTTAACGA TGCCAATTAT TGTTGATCAT AGTGTCACTG TGATGAGCGA TTTTGCCGCG
GGTGCTAACG CTGAAGATAA GCATTATTTT GGTATTAACT GGGACCGCGA CTTGCCTCTA
GCGACTGCTG CGGATATCCG TAATGTGGTC GAAGGTGAAC CAACGCCTGA TGGCTTAGGT
ACGTATGCCA TGGCTCGTGG TATTGAAGTC GGCCATATCT TCCAGTTGGG AACAAGTTAT
TCTAAATCAA TGAATGCCAC TGTGTTAGAC GAAAACGGTA AAGCCCAAGT GTTATTGATG
GGTTGTTACG GCGTTGGCGT GAGTCGTATT GTGGCTGCTG CTATTGAGCA AAACAACGAT
GACCGTGGCA TTACCTGGCC TGAAGCTATT GCACCGTTTA CTGTAGGCAT TTTGCCAATG
AATATGCATA AGTCACATCG TGTAGCTGAC ATTGCCGAAA AACTTTACCA AGACCTGGCT
GATGCTGGTG TTGAAGTATT GATGGATGAT CGTAAAGAGC GTCCTGGGGT TATGTTTGCC
GACATGGAGC TCATTGGCTT GCCGCATGTT GTCGTGATTG GCGATCGCAA TATTGATGCT
GGTGTATTTG AATATAAAAA CCGTCGCACG GGTGAGAAAC AAGATATTCC ATTCGATGAG
ATTGTGGCGT TTTTAACAAA TGCTGCTAAA GGCTAG
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| Protein sequence | MRVSKYLLST QKETPANAEV ISHQLMLRAG MIRRNASGLY TWLPSGLRVL RKVEAIVREE
MNKTGAIEIL MPLVQPADLW VETGRWDKFG PELLRFQDRN NRDFVLGPTH EEVITDLVRK
ELSSYKQLPL TLYQVQTKFR DEVRPRFGVM RAREFLMKDA YSFHLDQETM DNTYHAMHTA
YSNILTRMGL SFRPVLADTG SIGGSMSHEF HVLANSGEDL IAYSTGSDYA ANIEKAESPM
PTHTLAAPTE AMTLVDTPNA KTIAELVEQF NVVITKTVKT LIVKGATDEV PLVALVIRGD
HELNEIKADK LELVASPFEF ASETEIRAAV GAGPGSIGPV GLTMPIIVDH SVTVMSDFAA
GANAEDKHYF GINWDRDLPL ATAADIRNVV EGEPTPDGLG TYAMARGIEV GHIFQLGTSY
SKSMNATVLD ENGKAQVLLM GCYGVGVSRI VAAAIEQNND DRGITWPEAI APFTVGILPM
NMHKSHRVAD IAEKLYQDLA DAGVEVLMDD RKERPGVMFA DMELIGLPHV VVIGDRNIDA
GVFEYKNRRT GEKQDIPFDE IVAFLTNAAK G
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