| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2746 |
|---|
| Symbol | |
|---|
| ID | 4279652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3301054 |
|---|
| End bp | 3302610 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638135565 |
|---|
| Product | Na+/H+ antiporter NhaC |
|---|
| Protein accession | YP_751425 |
|---|
| Protein GI | 114563911 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1757] Na+/H+ antiporter |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.00133012 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAATAA GTTATGCCGA TTCGGCACTT TCTGTTTTGC CACCACTTGT GGCTATTACT
CTGGCCATTT TAACTCGTAA AGTATTGCTC TCTTTAGGGG TTGGCATTGT TTTCGGCGCC
TTATTACTGA CTGATTTCTC ATTGGTTAGT AGCGGCGAAT ATATCTTAAA TACCGCTAGC
CAGTTAGTTT GGAAAGACGC AGCGCTGAAT AGTTGGAATG TGTACATTCT AGGCTTTTTG
ATTGTGCTGG GCATGATCAC TGCATTAATC ACTGTTAGCG GCTCAGCCCG TGCTTTTGCT
GATTGGGCTA AATTGCGTAT TCGTAATAAA CGTGATGCCA AGTTAATGAC CATGTTTTTA
GGCTGCGTTG TGTTTATTGA TGATTACTTT AACAGTTTAG TCGTCGGCTC GATTTCACGT
CCAATTACTG ACCGCTACCA TATTTCGCGT GCCAAATTGG CTTATATTCT TGATTCCACC
GCCGCACCAG TGTGTGTTAT TTCTCCCGTG TCTAGCTGGG GGGCATACAT TATCGCATTA
ATTGGCGGTA TTTTAACTGC CCATGGATTT ACCGATTCTG GCCATTTGAG TGTCTTTATT
CAAATGATCC CAATGAACTT TTATGCCATT TTTTCGTTAT TATTATTACT GTGTGTAGCA
ACGTTTAGCT TAGATGTAGG TCCAATGCGT CAGCATGAAT TAAATGCGCT GCGTGGTAAT
TTGTTTGATG AGTCAAAAGG TCAACCACCT GGCGCAGTCA CAGATTTACC TGAAGCCGAT
ACCGGTAAAG TGATTGGCTT GTTTTTACCT ATCGCGGTAT TGGTGTTCGC GACAGTGTAT
TTTATGGTTT CAAGTGGCGC CGATGTGCTA GCAACCAAAG ACTTACCGTT TAATGTACTC
GGTGCATTTG AGAATACCGA TGTTAGCTCG TCACTATTTT TTGGCTCTGT AATTGGTCTT
ATTGCAACAC TTATTCTTGC GATTCAGCAA AAAGTTGATT TGTCTATGTT ACTCAAAGGA
ATGTCGGTTG GTGCTCGTTC TATGTTACCA GCCATTTACA TATTGCTTTT TGCATGGACA
ATTTCGAGTG TGATTGGTCA GCTTGAAACC GGTAAATATA TGGCAAGTTT AGCCACTGAC
AATATTCCAT TTGCCTTACT ACCTGCAGTG TTATTCTTGT TAGCGGGTAT TACCGCATTT
TCGACTGGCA CAAGTTGGGG CACGTTTGGG ATTATGTTGC CTATTGCCGC AGACATGGCG
ATGGGAAGTG ATAGCACGAT GATGTTGCCA ATGTTGGCTG CGGTGTTATC TGGTGCGGTA
TTTGGCGATC ATTGTTCGCC CATTTCTGAC ACCACCATAT TGTCGTCAAC CGGTGCCAGT
TGCCATCATA TTGATCACGT TGTTACTCAA CTGCCGTATG CCTTAATTGC TGCTTTAATT
AGCTTGGTCG GTTACACCGT ATTAGGTTTT ACTGGCTCAT TAATCGCTGG GTTAGTTTGC
TGTAGCATGT TGTTTGTCAT TAGTGTTGTT GTATTACATT TTTGGGCTAA AAAGTGA
|
|---|
| Protein sequence | MIISYADSAL SVLPPLVAIT LAILTRKVLL SLGVGIVFGA LLLTDFSLVS SGEYILNTAS
QLVWKDAALN SWNVYILGFL IVLGMITALI TVSGSARAFA DWAKLRIRNK RDAKLMTMFL
GCVVFIDDYF NSLVVGSISR PITDRYHISR AKLAYILDST AAPVCVISPV SSWGAYIIAL
IGGILTAHGF TDSGHLSVFI QMIPMNFYAI FSLLLLLCVA TFSLDVGPMR QHELNALRGN
LFDESKGQPP GAVTDLPEAD TGKVIGLFLP IAVLVFATVY FMVSSGADVL ATKDLPFNVL
GAFENTDVSS SLFFGSVIGL IATLILAIQQ KVDLSMLLKG MSVGARSMLP AIYILLFAWT
ISSVIGQLET GKYMASLATD NIPFALLPAV LFLLAGITAF STGTSWGTFG IMLPIAADMA
MGSDSTMMLP MLAAVLSGAV FGDHCSPISD TTILSSTGAS CHHIDHVVTQ LPYALIAALI
SLVGYTVLGF TGSLIAGLVC CSMLFVISVV VLHFWAKK
|
|---|
| |