| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2684 |
|---|
| Symbol | |
|---|
| ID | 4279590 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3226165 |
|---|
| End bp | 3226728 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638135489 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_751363 |
|---|
| Protein GI | 114563849 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0327308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGATT CATTGCGAAA GAAAAAGTCC GAACCCGCGG TCTTATCTGA GATGCTAACA
AAACAACGAC GATACGATAG CCTTGTCAGG GCTCTTCACA CTGACATATT TCGCTACGCC
TTTTGGTTAT GTGGTGATAA GCATGTTGCT GAAGATATTA CTCAAGAAAC GTTCTTAAGG
GCGTGGCGTT CATTGGACTC ATTAAATGAC GAAAAAGCGG CTAAAGCCTG GCTAATTACC
ATTTTAAGAC GGGAAAATGC CAGACGTTTT GAGCGTAAAC AATTTGACTA TAGCGACGTA
GAACAAGATT TACTTGAAGA TGTACTATCG ACAAGTCATG AAGAAGATAC CGAGCAGTAT
TGGTTACGTC GTCAAATAGG TAAACTCGAT ATCGAATATC GAGAGCCTTT GTTATTGCAG
CTGATTGGCG GGTTTAGCGG TGAAGAGATT GCCACGATGC TCGAACTCAA TCGAAATACG
GTAATGACCC GTTTATTTAG AGCCAGAAAC CAGTTAAAAG ACGCTCTCGA AGCACCAGAG
GTAAGAGGTC AATCAAATGG ATGA
|
|---|
| Protein sequence | MFDSLRKKKS EPAVLSEMLT KQRRYDSLVR ALHTDIFRYA FWLCGDKHVA EDITQETFLR
AWRSLDSLND EKAAKAWLIT ILRRENARRF ERKQFDYSDV EQDLLEDVLS TSHEEDTEQY
WLRRQIGKLD IEYREPLLLQ LIGGFSGEEI ATMLELNRNT VMTRLFRARN QLKDALEAPE
VRGQSNG
|
|---|
| |