| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2682 |
|---|
| Symbol | |
|---|
| ID | 4279588 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | + |
|---|
| Start bp | 3222330 |
|---|
| End bp | 3224435 |
|---|
| Gene Length | 2106 bp |
|---|
| Protein Length | 701 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638135487 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_751361 |
|---|
| Protein GI | 114563847 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCCATT TTATTCGCCC TGAATGGCTA TTGGGGTTCA TTCCAGTATT GATATTAAGT
GCATTATTTT GGCGTAAACA TAGCCAACAA TCAGCATGGA AGCAGTATAT CGCCCCACAT
TTAAGTCAGT TGCTTATCAG CCAAACTGTT GAGAAAAGTC ATCAGCCCAA ATGGCTATTA
ATTGTCTGTT GGATCATCGC CGTTATTGCG CTTTCAGGGC CGGCATTAAA CAAACAAAAT
CTGCCGGTAT TTGCTACCGA ACAAGGTCGA GTACTCATTA TGGATATGTC TCAGTCCATG
TATGCCACCG ACTTAAGTCC AAATCGTTTG TCCTACGCTA AATTTAGAGC GACCGACTTA
TTAAATGAAT TAAAAGAAGG CGAAACAGGG TTGATTGCCT ATGCTGGTGA TGCTTATACC
ATTAGCCCGT TAACACGCGA CAGTGATACC ATTTTAAACT TACTGCCAAC ATTATCACCC
GATATTATGC CCACTAAAGG ATCTAACTTA GCAGCGGCGT TATCTCTAGC AGAAAAACTA
TTGGCTCAAG GTGGCCATGT CAGTGGCGAT ATTATTGTTA TGACAGATGG CATTTCTGCA
CAACAATTTA ATCAAGCAAG CAGTGCACTT AACAGCCGTT ACCGTTTATC GATCATGGCT
TTTGGCAGTA AACAAGGTGC GCCAATTCGC TTAGCTGATG GTCAATTACT GCGTGATAGT
AGTAATGAAG TTGTCGTCGC TAAAACCGAT TACGGTCTAT TACAAAAACT AACCCAACAA
CATCAAGGGA TCCTAGTACC GGCCCAAACC GATGGCAGCG ATGTGTCCAC TCTAACCAAC
TGGCTGGCAA CTGATGGTAA GGCAACAGAA ACTGAGCTTG CTGGCGAGAC TTGGCAAGAT
CTGGGTCCAT ATTTAGCCAT GTTATTAATT ATCCCGATGT TAATGAGTTT CAGACAAGGA
TTATTAACCC TCATGCTTAG CCCTAGCTTA CTACTCGCTA CTGCAATGAC TTTGAGTCTA
GCCAACAGTC AGCCAGCACA AGCCTCTGTG TGGCAGGGCT TATGGAAGAC TAAAGACCAA
CAGGCACAGT CAGCATTTGA ACAAGGTGAA TTTTCACAAG CAGCGGAAAC ATTCGAAAAC
CCTCAATGGC AAGCATCGGC ACAATACAAA GCCGGTAATT ATCAACAAGC ACTCGAAGGA
TTTGAGCAAG ATAGCAGCGC CCAAGGTTTA TATAACCAAG GTAATGCCCT GATGCAACTG
GAAGATTATC AAGAGGCTAT TAAGCGTTAT CAACAAGCCA TTGCGGCTCA ATCACAGTTT
ACTGAGGCAG AACAGAATTT AGCCTTAGCC CAGCAATTGC TTGAACAACA AAAAGAGTCA
TCAGATCAAC AATCTGATAA ATCAGAGCAA GATCCATCTA AATCAAATGA TGACAACTCT
ACACCAGAAC AATCTTCTGA TAAAAATGAA TCTCAACAAG CAGATTCCGA CGAATCACAG
TCTGGTCAAC AGGAAAGCCA ACAAGGTCAA CAAGACCAAT CTGGCCAACA AAACCAACAG
CAGAACTCTG AAAACCAATC AGACAATAAA AATGATCGTT CATCTGATAA TAATAAACCG
CAATCACAAA GTGATCAGCC ATCAGACCGC GATGAACAAA AAGATGATAA ACAATCCGAA
TCGTCACAAA ACGAACCACA ACAGCAAAAT GATCAGCAAC AAAATAGCTC AGATCAACAA
TCATCAACCT CTGAAGATAA CAACACTTCA CAACAAGATG ATTCAACGCA AGATTCTCCA
GCTAGTAACG AATCTAGCAT GCAGGCCAGT GCGACTGAAA ATGGAGAACA ACAAGACGCT
GGCAACCAAA AAATGGGAGC TGCACCGTCT TCAATAGAGC CAAATACAGA AGACATGAAA
GATAGTAAAC CATCAGAAAT GATCTCGGCT TCACAAATAA ATCAAGATGA TTTACCTGCA
GATATGCAAC GTGCTCTTCG CGCCATAAAT GAAGATCCAC AAGTATTAAT CCGCAATAAA
ATGCAGCTTG AATATCAAAA ACGTCGTCAA AATAGTCAAC CGCCTAAGGA AAATGAACAG
TGGTAA
|
|---|
| Protein sequence | MIHFIRPEWL LGFIPVLILS ALFWRKHSQQ SAWKQYIAPH LSQLLISQTV EKSHQPKWLL
IVCWIIAVIA LSGPALNKQN LPVFATEQGR VLIMDMSQSM YATDLSPNRL SYAKFRATDL
LNELKEGETG LIAYAGDAYT ISPLTRDSDT ILNLLPTLSP DIMPTKGSNL AAALSLAEKL
LAQGGHVSGD IIVMTDGISA QQFNQASSAL NSRYRLSIMA FGSKQGAPIR LADGQLLRDS
SNEVVVAKTD YGLLQKLTQQ HQGILVPAQT DGSDVSTLTN WLATDGKATE TELAGETWQD
LGPYLAMLLI IPMLMSFRQG LLTLMLSPSL LLATAMTLSL ANSQPAQASV WQGLWKTKDQ
QAQSAFEQGE FSQAAETFEN PQWQASAQYK AGNYQQALEG FEQDSSAQGL YNQGNALMQL
EDYQEAIKRY QQAIAAQSQF TEAEQNLALA QQLLEQQKES SDQQSDKSEQ DPSKSNDDNS
TPEQSSDKNE SQQADSDESQ SGQQESQQGQ QDQSGQQNQQ QNSENQSDNK NDRSSDNNKP
QSQSDQPSDR DEQKDDKQSE SSQNEPQQQN DQQQNSSDQQ SSTSEDNNTS QQDDSTQDSP
ASNESSMQAS ATENGEQQDA GNQKMGAAPS SIEPNTEDMK DSKPSEMISA SQINQDDLPA
DMQRALRAIN EDPQVLIRNK MQLEYQKRRQ NSQPPKENEQ W
|
|---|
| |