| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2672 |
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| Symbol | |
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| ID | 4279579 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3209135 |
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| End bp | 3213490 |
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| Gene Length | 4356 bp |
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| Protein Length | 1451 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 638135477 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_751351 |
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| Protein GI | 114563838 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.457113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACTTCT TTGCGGCATC AAAAGAGAAT AAGTATAAAT CTATGCCTAA AATTTTACTC
TTTATCTGTG TTTATTTTAT TTTTAGTTTT GGCGCTACGG CCATTGAAGC TGATGACACT
GAATCAAATT TCGATCTACT ACTAAACTAC ACTAATTATG GTGTTGCTGA TGGTCTATCT
CAGGACACAG TAACGGCCAT AGTAGAAGAT CCAGAGGGTT ACGTTTGGGT TGGTACTATC
AATGGATTAA ATCGTTTCGA CGGTAATGAA TTCAAGCAAT TCTATGCCGA TGATAATGCA
AAATCTCTAC CCAGCTCTTT TATTCGTAAT TTACTTATCG ATGACAATGG TGTTCTGCAA
ATCGGGACTG ATAAAGGTCT CGTGCAATTT GATAAAGAAA CAGAATCATT CTCCAGAAAC
AGTATCTCAG CTCAAATTGG TGAACAAGCC ATTTGGTCAA TATCAAAACA AGATGGTGAA
ATGTTTATTG GTTTGAATGG TAAATTTATA TCTTATGGAA AAAATAATGA CCAGAATTAC
ATTTTTGAAG ATATAAAATT AAAAGAAATA AAAAATGTCA TTAAATTAGA TGATATTTTT
TACATTAGAA ATTATGAAGG TGATATTTTT AAAAAAAACA TCACCACTCT TAAAAAAGTA
CTAAGTAAAT CTAATGACAT TATTTCTTTC CGCAACAACA TAATTGCAGC AACAGATCAA
GGTTTGTTCG TTCTCAATGA AGAAATAAAA AAAATATCTG AATTAACACT AACTGATTTA
TCAACTAACT CTTCTAACAA AAATAATATC ATCGGACTAT ATGAAAACAA AATATTTAAT
ATTGAAATTA TCAACAGTCA AATAAAATGG ACGTCTATCG GTGAAATCCA AGTTGAAGGT
GAAAAATTTA TAAAATCATT CATATCCATC AATAAAGAAA ACTTTTACAT TTCTAACTAT
AATGATGGAT TTATAAAAAT ATCACCCGAA AATAATTATG TTAAAAAAAT AAAAGGCACC
CCAGATAACA TATGGTCAAC ATCAAAATAT AAAAACAATA TATATTTAGT TAATGATGAT
AGTAATATAT ATATTTATGA TGAAAATGTA ATCTTAAAAA ACATAATTAA CACATCACTA
CCTCACGGAC CCAAATCGAT ATTGTTGATC AATGAAATAG CATTTATAGG TACTAAATCT
GGTTTATATG TAATAAATAT AGAAAATGGT ATCGAAAGAA AAATAAATAA TGATTTAATA
GTTAGTATAA AATATAGTAA AAGTGAAAAT AAAATCTACA GCTCAAATTT TAAAGGTGAA
ATACAGGTAC TGTCACCAAC TGGTGAGATT ACAGAGGAAA TAAATACGAA CTTCAGTTAT
CCGATCTATG ACATGATTAA AATAGGCTCT AAGTTATGGA TAGCATCTCA AGCAGGCTTA
CTTTTATGGG AAAATAATAA TATAACAAAA GTTTTCCATG ATGATATAGT CTTTAATATT
GTCGTTAATA AAAACAAAAT CTATTTTGGT ACTCGAAGTG CTATTTACTC GATGGACAGT
AATACAACCA CCAAACCCAA AGTGATATTC AATAGAAAAA AACTCATATA TTCAATGGCT
TTTATAGACA ACATACTTGT TGCATCGTCA AATAGAGAAG TTTATATTAT TGATACAGAA
ACAAGTATCG CTCACACTCT TAATATTGAA AATGGTGTTT TAAAAGACTA TAACACTCAG
TCATTATTAG TAATGAATAA GTCTGTATTA TTTGGCGGAC CTGATGGACT GAGTCTAGTA
GAACCTAAGA AAATATTAAC TGCAATATCT AAAAACTCTC CTGACAAAAT AAAATTTACT
GACTTCCTTT TATTTAATAG CCCCGTCGAC ATTGGTTCGA AAACCCTGAA TAAACCTATA
AATAATCTAG ACGAAATCAC ATTAAAACAT TCAGACTATC CATTTACAAT CAAATTTAAT
ATTTTAGGAA AGAATAATAA TGACTTTGAA TTTTTTTATT ACTTAGAAGA CTTGGAAAAA
AACTGGTTAT CAACGAAAGG AAATAACAGT GTAACTTATA CAAATTTATC AGCTGGAAAA
TATACTTTTA AATTATATTC TGAAAATAGG CTGTCAGGTA AAAAAACTGA TGTTAAAAGT
ATAAAAATAT TAGTTACACC TCCTTGGTGG TTATCTTTAG AAGCAAAGTT GGTATATGGA
CTATTTATAT TATCCCTTAT AATTTTATCT TTTAAAGTAA TCATTCGTCG ACGAGAAATC
CAAAAACAAA TAGCCCAAAG TGAAGAAAGA TTAAAACTGT CTTTATGGGG CAGTGGCGAT
GAAATGTGGG ACTGGGATAT TGAAAGTGGC AAAATCTACC GTTCTAATAT CTGGGGCTCT
TTAGACTTCC CTCAAGACGG TCGTCGCTCG GGTAATCCTG ATGAAGAAAG TAATATCCAC
CCTCTCGATA GAGATCGTGT GACAAGGGCG CTAAATGATC ATTTCAATGC CATTACCGAT
CACTTCGAAA TAGCTTATCG CGTTAAAGCA CGTAATCAAC AGTGGGTTTG GATTTTAGAC
AGAGCCAAGA TAGTTGAACG CGATCAAAAA GATGTCCCGC TTCGAATGAC GGGCACCATT
AAAGACATCA ATAATATTAA GCAAGCAGAA GAACAACTTC GTTTATTCGC TAGAGCAATT
GAAAATATTT CTGAAGGGAT GTTTATTCTC AATGAGAAAT ATCAGTTTGT TGAAGTCAAT
AATGCCTGTT GCGAACTAGC AGCTTCAACA AAAGAAAAAT TTGCGAATGA AATACTCCAT
TTCAGTCGTT ATCCCGCCAG TTATTCTGAA CAAATAAGAA ACTTGTTAAA GCAGCAAGGT
CGTTGGAGCG GCGAAATTGA AGCGAGTAAA GGTAAAGATA GCTATTTCTT AATGGAACTG
ACCATTGACG CTATATACAA TGAACAAGGT GAAACCAGTC ATTATGTTGG CGTATTTTCC
GATATCACCC GTCGTAAGCA GCAAGAAGAA GAGCTCAGAA AACTCACCAA TAATGACTTA
CTTACTGGTT TACCCAATAG GTCTAGTTTG CAAGTGACAC TGAGTAACTT GGTTAAAAAA
GATGTTCATC ACACCCTAAT GGTGCTTGAT TTAGATAATT TCAAACGTAT TAATGACTCA
TTAGGCCATC AAATTGGTGA TGACTTATTA ATTGGTGTTG CAGAACGTAT TAAGTTAGCA
ATTCCAAAAC ATGCCAGCTT ATACCGTCTA GGCGGTGATG AATTCGCTTT ACTCGTCGAT
CAACACCCAG ACATAGGGTC ATGTGCAGCC ATTGCTACAC AAGTAATAAA TTGTCTAAAA
CCAGCTTTCA CTCTTAATAA TGACTCACTC GTACTCGGTA TTAGTATCGG CATAGTGCTT
TATCCTGAAG ATGAACAAAA CGAGCAAGCA TTGTTACGCA AAGCGGATAT TGCTATGTAT
CACGCTAAAT CTGGTGGTGG TAACCGTTAT CAGTTCTATT CAGAGTCATT AAACCAAAAT
GCTTTACGTC AACTCGAAAT AGAAAGCTTA ATCAGAGAAG CACTCAAAGA CGATTTGTTT
GAAGTTTATT ATCAACCCAA AATCGACGTT AAGAAAGATC GTCTTAACGG AATGGAAGCA
TTAGTGAGAT TAAATCATCC TAAATTAGGC CTGATTGGAC CGAATGAATT TATCCCCCTT
GCCGAAGAAA ATGGTTTGAT CGTTGAAATT GGTGATGTCG TCTTGCGAAA AGCGTGTTTT
GCTGCGCAGA AATGGCTTGA GCTAGGATTG TTTAGTGGTC GTGTTGCTGT CAATTTATCG
TCAAGACAAT TTGCTCTGCC CGATTTACAG CAACGAATAG AGTCAATTTT ACGACTGACA
AAATTACCGG CTAAACACTT AGAGCTTGAA ATCACTGAAG GGACTGTCAT TAAAGATCCC
GAACAAGCCA TTAAAGTGAT GCAACAATTG GCGAAAATGG GCGTAAGCCT TGCTCTTGAC
GACTTTGGGA CAGGTTATTC CTCTTTATCG TATCTAAAAC GATTCCCCAT TAATTGCTTA
AAAATTGATA AAACTTTCGT AGATGACATA GATAAATCTG ACCGAGATCT GAAAATGGTC
GATTCTATTA TTACTATAGC CCACAATATG GGACTGACAG TGGTAGGTGA AGGCGTAGAA
CAAACCGCAC AACTCAATAT ATTAAAAGCA CTTAATTGTG AGGAAATTCA AGGTTATATT
TATAGCAAGC CTATTAGAGA AGCTGACTTT GAGTTAATGC TCACTGCAGA CAAAGTTAAA
TTTGAAGCAT TAAACAGTAC CTTAATGAAA AAATAA
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| Protein sequence | MNFFAASKEN KYKSMPKILL FICVYFIFSF GATAIEADDT ESNFDLLLNY TNYGVADGLS
QDTVTAIVED PEGYVWVGTI NGLNRFDGNE FKQFYADDNA KSLPSSFIRN LLIDDNGVLQ
IGTDKGLVQF DKETESFSRN SISAQIGEQA IWSISKQDGE MFIGLNGKFI SYGKNNDQNY
IFEDIKLKEI KNVIKLDDIF YIRNYEGDIF KKNITTLKKV LSKSNDIISF RNNIIAATDQ
GLFVLNEEIK KISELTLTDL STNSSNKNNI IGLYENKIFN IEIINSQIKW TSIGEIQVEG
EKFIKSFISI NKENFYISNY NDGFIKISPE NNYVKKIKGT PDNIWSTSKY KNNIYLVNDD
SNIYIYDENV ILKNIINTSL PHGPKSILLI NEIAFIGTKS GLYVINIENG IERKINNDLI
VSIKYSKSEN KIYSSNFKGE IQVLSPTGEI TEEINTNFSY PIYDMIKIGS KLWIASQAGL
LLWENNNITK VFHDDIVFNI VVNKNKIYFG TRSAIYSMDS NTTTKPKVIF NRKKLIYSMA
FIDNILVASS NREVYIIDTE TSIAHTLNIE NGVLKDYNTQ SLLVMNKSVL FGGPDGLSLV
EPKKILTAIS KNSPDKIKFT DFLLFNSPVD IGSKTLNKPI NNLDEITLKH SDYPFTIKFN
ILGKNNNDFE FFYYLEDLEK NWLSTKGNNS VTYTNLSAGK YTFKLYSENR LSGKKTDVKS
IKILVTPPWW LSLEAKLVYG LFILSLIILS FKVIIRRREI QKQIAQSEER LKLSLWGSGD
EMWDWDIESG KIYRSNIWGS LDFPQDGRRS GNPDEESNIH PLDRDRVTRA LNDHFNAITD
HFEIAYRVKA RNQQWVWILD RAKIVERDQK DVPLRMTGTI KDINNIKQAE EQLRLFARAI
ENISEGMFIL NEKYQFVEVN NACCELAAST KEKFANEILH FSRYPASYSE QIRNLLKQQG
RWSGEIEASK GKDSYFLMEL TIDAIYNEQG ETSHYVGVFS DITRRKQQEE ELRKLTNNDL
LTGLPNRSSL QVTLSNLVKK DVHHTLMVLD LDNFKRINDS LGHQIGDDLL IGVAERIKLA
IPKHASLYRL GGDEFALLVD QHPDIGSCAA IATQVINCLK PAFTLNNDSL VLGISIGIVL
YPEDEQNEQA LLRKADIAMY HAKSGGGNRY QFYSESLNQN ALRQLEIESL IREALKDDLF
EVYYQPKIDV KKDRLNGMEA LVRLNHPKLG LIGPNEFIPL AEENGLIVEI GDVVLRKACF
AAQKWLELGL FSGRVAVNLS SRQFALPDLQ QRIESILRLT KLPAKHLELE ITEGTVIKDP
EQAIKVMQQL AKMGVSLALD DFGTGYSSLS YLKRFPINCL KIDKTFVDDI DKSDRDLKMV
DSIITIAHNM GLTVVGEGVE QTAQLNILKA LNCEEIQGYI YSKPIREADF ELMLTADKVK
FEALNSTLMK K
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