Gene Sfri_2648 details

Gene Information

• Locus tag: Sfri_2648
• Symbol: uvrC
• ID: 4279555
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella frigidimarina NCIMB 400
• Kingdom: Bacteria
• Replicon accession: NC_008345
• Strand: -
• Start bp: 3175401
• End bp: 3177233
• Gene Length: 1833 bp
• Protein Length: 610 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 638135447
• Product: excinuclease ABC subunit C
• Protein accession: YP_751327
• Protein GI: 114563814
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0322] Nuclease subunit of the excinuclease complex
• TIGRFAM ID: [TIGR00194] excinuclease ABC, C subunit

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.473447
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAGTG GTTTTAACGC CAAATCCTTT TTAAAAAATG TTACCTCAGC ACCTGGTGTT 
TATCGAATGT ACGATAAGCA CCAACAGGTT ATTTATGTTG GTAAAGCTAA AGATCTCAAA 
AAACGTTTAA GCTCGTATTT TAGAGTTAAC ATCGCCAATG TTAAAACTCA GGCGCTAGTT 
TCGCATATCG ATCATATTGA TGTGACCGTT ACGCATAGCG AAACTGACGC GTTATTACTC 
GAAAATGATT ACATCAAACA GTACATGCCC AAATACAACG TGCTACTGCG TGATGATAAA 
TCTTATCCAT ATATTCTGTT GAGCGGCCAT AAGCACCCTC GGCTTGCTTA TCATCGTGGG 
CCCAAACGTG AAAAAGGCCA TTATTTTGGC CCATATCCTA ATGGTGGCGC AGTACGTGAA 
AGTTTGCATT TAATACAAAA GCTGTTTCCA ATCCGTCAAT GCGATGACTT ATATTATAAA 
TCCAGATCTC GCCCTTGTTT ACAGTATCAA TTAGATCGCT GCAGTGCGCC TTGCGTGGGG 
ATTGTCAGTG ATGATGAATA CAGCGAACAG GTCAAATTAG CCGGTTTATT TTTACGCGGA 
AAAGATAAAC AAGTCATATC ACAGCTGGTG GCCAAAATGG AAACCGCTGC AATTGATATG 
GAATACGAGC GAGCTGCGCA GTATCGTGAC CAAATTACCG CATTAAGGCG CGTAGCAGAG 
CAGCAGGAAG TGTCAAATCA TAAAGGTGAT ATGGATGTCA TCGGCGTCGA TTACGCCTCT 
GGTATTGCCT GTTTTCATCT ACTGTTTATT CGTGATGGTA AAATTTTTGG CAGTCGCAGC 
TATTATCCTT CCGTACCAGC AGAAACTGAA ATTGAAGAAG TGTTGTCATC ATTCTTGGGC 
CAGTTTTACC TAAATGCCGA TATTCAGCGC ACGATTCCAA AAGAAGTCAT CCTCAGTCAT 
CACTTTGACG GTATAACAGA ATTACAAGCG TCGATAGAAC ACGCATTAGA TAAAAAGTTT 
GAGTTAAAAA CGCAAGTAAG AGGCGACAGA GCAAATTTTT TACGCCTTGC CATGACCAAT 
GCCAGTAATG CCGTCGCTAC TAAGTTATCG CATAAAAATA CCGTAGAACA ACGCTTTCAA 
TTACTTGAAG AAGCACTTGA GCTTAATGAA CCGATTAAGC GGATGGAATG CTTTGATATT 
AGTCACACCA TGGGCGAAAG CACAGTCGCA TCGTGTGTGG TGTTCAATCG TGAAGGGCCA 
CATAAAGCTG ATTATCGCCG TTACAACATT ACCGGTATTA CTGGTGGTGA TGATTATGCC 
GCGATGGAAC AAGCTATAAG CCGTCGATTT GATAAAATCG ATAACAATGG CAAAGTACCT 
GATTTAGTCT TCATTGATGG CGGTATTGGC CAGTTAAGAG TGGCGCAAAC AATTGTCGAT 
GAAAAGTGTG TCAACATTGA TCATCCGCCA TTGCTCATTT GCGTAACTAA AGGTGAAGGC 
CGTAAAGCAG GGCTCGAAAC GTTTACCGTT GGTGGTAGTG AGCAAACGTT CGAGGTTGCC 
AGTGACTCAC CTGCATTTCA TTTGATGTTA CACATTCGCG ATGAGTCACA TCGCTTTGCG 
ATTACCGGAC ACCGTAATAA ACGTCAAAAA ACTCGCAATA CTTCTACCCT AGAATCCATC 
GCAGGTGTGG GCCCTAAAAG ACGTAAAGCT TTGTTGCAAC ATTTAGGCGG AATTCAAGAA 
GTGAAGGGCG CTAGCGTGGC TGAATTGACA AAAGTACCCG GAATTAGCTT AGAAATGGCA 
CAAACAATTC ATGATGCATT GCGAGGGGGC TAA 

 

Protein sequence

MPSGFNAKSF LKNVTSAPGV YRMYDKHQQV IYVGKAKDLK KRLSSYFRVN IANVKTQALV 
SHIDHIDVTV THSETDALLL ENDYIKQYMP KYNVLLRDDK SYPYILLSGH KHPRLAYHRG 
PKREKGHYFG PYPNGGAVRE SLHLIQKLFP IRQCDDLYYK SRSRPCLQYQ LDRCSAPCVG 
IVSDDEYSEQ VKLAGLFLRG KDKQVISQLV AKMETAAIDM EYERAAQYRD QITALRRVAE 
QQEVSNHKGD MDVIGVDYAS GIACFHLLFI RDGKIFGSRS YYPSVPAETE IEEVLSSFLG 
QFYLNADIQR TIPKEVILSH HFDGITELQA SIEHALDKKF ELKTQVRGDR ANFLRLAMTN 
ASNAVATKLS HKNTVEQRFQ LLEEALELNE PIKRMECFDI SHTMGESTVA SCVVFNREGP 
HKADYRRYNI TGITGGDDYA AMEQAISRRF DKIDNNGKVP DLVFIDGGIG QLRVAQTIVD 
EKCVNIDHPP LLICVTKGEG RKAGLETFTV GGSEQTFEVA SDSPAFHLML HIRDESHRFA 
ITGHRNKRQK TRNTSTLESI AGVGPKRRKA LLQHLGGIQE VKGASVAELT KVPGISLEMA 
QTIHDALRGG