| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2644 |
|---|
| Symbol | |
|---|
| ID | 4279551 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella frigidimarina NCIMB 400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008345 |
|---|
| Strand | - |
|---|
| Start bp | 3169816 |
|---|
| End bp | 3170859 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638135440 |
|---|
| Product | transposase IS116/IS110/IS902 family protein |
|---|
| Protein accession | YP_751323 |
|---|
| Protein GI | 114563810 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3547] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0103758 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTTA CCACTATTTC GATTGATTTG GCCAAGAATG TATTTCAAGT CCTTGGGATG
GATTGTCATG CAAAACAAGT CTTCAATAAG CGTTTAAATC GCACTCAACT GACCGAATTT
ATGCTGCAAC AACCCAATTG CGATGTGGTC TTCGAGGCTT GTTATTCATC CCATTACTGG
GGGCGTAAGT TTCTCGCTAT GGGGCATAAC GTTAAGCTCA TTCCTGCCCA ACATGTCACC
CCGTTCGTGC GAGGCAGTAA AAATGATAAC AATGACACTA TGGCGATTTA TGAAGCCAGC
TTTAGGCCTA ACATTCGTTT CGTGCCAGTG AAAACCGAAG AGCAGCAAGA GATATTGATG
TTGCACCGTA TCAGGGAGCG ATTAGTAAAG GAGAAAACCG CCTGTACTAA CCAAATTAGA
GGTGTCTTAG TTGATTTTGG CATTTGTTTT GCCCAAGGCT ATAAAGCGTT TGAAGTGGCC
ATTTGGGACA TCATTAATGA TGCATCACAA CGTCCCATAA TCAAGCTGAT GGCAAATGAC
TTCTGGGGTG AATATCAAAG TGTAAATACA CGTTTAGACA GAATTAATAC CTTGATAAAA
AAGCTTATTG AGCGTGACCC TAATGGCAAA ATATTACTGA GTATTCCAGG TGTCGGCCCC
ATCATCGCTT CAGCATTTGT CGCATCAATT GGCCGAGGCC AGGCTTTTAA TACCGCTAAA
GAGTTGGGTG TGTGGCTGGG GTTAACTCCT AAACAATTTG CCTCTGGCCA TAGAAGTGTT
AATGGCAGTA TTACCAAACG AGGCAATGGC TATTTACGCA AGCAACTTAT TCATGGTGCC
AGAGCAGTCG TCAGCCACGC TAGTAAAAAA CAAGATGATT TAAACCTTTG GATAATGCAG
TTAAGAAGCC GAAAAAGCAT CTGCAGTACG GTGGTTGCCA CCGCCCATAG ACTCGCCAGA
CTAATATGGA TTTTATTACA AAAACAAGTG CCTTATGTTC CGCAATATGC TGCAAATCAA
GGTGTAAACC ATGGTACTTG TTAA
|
|---|
| Protein sequence | MKVTTISIDL AKNVFQVLGM DCHAKQVFNK RLNRTQLTEF MLQQPNCDVV FEACYSSHYW
GRKFLAMGHN VKLIPAQHVT PFVRGSKNDN NDTMAIYEAS FRPNIRFVPV KTEEQQEILM
LHRIRERLVK EKTACTNQIR GVLVDFGICF AQGYKAFEVA IWDIINDASQ RPIIKLMAND
FWGEYQSVNT RLDRINTLIK KLIERDPNGK ILLSIPGVGP IIASAFVASI GRGQAFNTAK
ELGVWLGLTP KQFASGHRSV NGSITKRGNG YLRKQLIHGA RAVVSHASKK QDDLNLWIMQ
LRSRKSICST VVATAHRLAR LIWILLQKQV PYVPQYAANQ GVNHGTC
|
|---|
| |