| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2643 |
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| Symbol | |
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| ID | 4279550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3167455 |
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| End bp | 3169095 |
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| Gene Length | 1641 bp |
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| Protein Length | 546 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638135439 |
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| Product | pyridoxal-dependent decarboxylase |
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| Protein accession | YP_751322 |
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| Protein GI | 114563809 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.160588 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCTCGA AAATCACCCG TCAAGCAAAC GCTTCAGAAG ACAGTTTACT GCGTATTTTT
ACCGCCCCTG AAGATTCAAC CTCGACGTTG AGCATTATTG AGCAAAAGCT ATCTCAAGAC
CTCGCGGGTT TTTTAGGTAA TAGCATCGCC GCACTGGAAA AACCACTGTC AGAAATTGAA
ACCGACTTTA GCGCCTATCA GATCCCAACA GAACCCAAGT TCGTTTCTGA TTATGCCGAC
GAAATAATGC AAAACCTAGT CGCTCATTCA GTCCATACTT CAGCACCCAG TTTTATTGGA
CACATGACCT CGGCCTTGCC TTATTTTGTG TTACCACTGT CAAAAATGAT GGTCGGGCTA
AACCAAAATT TAGTCAAAAT TGAAACATCC AAAGCCTTTA CTCCATTAGA ACGCCAAGTG
TTAGGCATGA TGCATAATTT GGTGTATCAG CAATCTGATG ATTTCTATCA TCAATGGATG
CACAGCGCTA ACCACTCACT CGGGGCATTT TGCTCAGGTG GCACCGTTGC TAATATCACC
GCACTGTGGA TTGCCCGAAA CCGGCTGCTA CAACCACGCG GCGATTTTAA AGGCGTCACC
CGCGAAGGAA TGACGAAAGC ATTGCGCTTT TATGGCTATG ATGACCTTGC TATTTTAGTG
TCAGATCGCG GTCATTACTC TTTGGGTAAA ACTGCCGACT TGCTGGGTAT TGGCCGAGAT
AACATCATTA GCATCCCAAC AGATGAACAT CATAAAGTCG ATGTTGCCGC CATGCGAGAT
GCAGCAGAAA AGCTGGCACA ACAAAATATT AAAGTGATGG CCATTGTCGG TATCGCTGGC
ACAACAGAAA CAGGCAATGT GGATCCCTTA ACTGAATTAG CAGCGTTAGC CAGCGAGCTA
AATTGCCATT TTCATGTCGA CGCTGCCTGG GGCGGCGCGA GTTTATTATC TAAAAAATAT
AGCCACTTAT TGAAAGGCAT CGAATTAGCT GACTCCGTCA CTATCGATGC TCATAAGCAA
ATGTATGTTC CAATGGGCGC TGGTATGGTG CTATTTAAAG ATCCTGAACT GGCTAAAGCC
ATAGTGCACC ATGCTGAATA TATTCTACGG GTAGGTTCAA AAGACTTAGG CAGTCAAACG
CTGGAAGGTT CGCGCCCAGG GATGGCAATG CTAGTGCATG CTTGTCTTCA GATTATTGGC
CGTGATGGCT ATGAAATTCT CATTAATAAC AGCCTAGAAA AAGCCCGTTA CTTTGGATCA
ATCATCGACC AACATGCTGA CTTTGAGTTA GTCACAGCAC CGGAGTTATG TTTACTGACC
TATCGCTATG TACCAAAATC GGTGCAAGCT ATACTCACTA CAGCTCTAGC CAACCAAGAC
AGCGCTTTAG TTGCATCAAT CAATGAACTA CTCGATGGAC TGACACAATT TATTCAAAAG
CATCAACGCG AACAAGGTAA ATCGTTTGTG TCACGCACAC GTATTAAACC GGCAAAATAC
TTACGCCAAC CAACGACAGT ATTTCGTGTG GTACTGGCCA ATCCGTTGAC CAGTCATCAA
ATATTGCATG ATGTACTGAC AGAACAAGTT GAGATAGCCG CATTAGACAG CGAATACTTA
CCCCAGTTGT TGGCGTTGTA G
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| Protein sequence | MTSKITRQAN ASEDSLLRIF TAPEDSTSTL SIIEQKLSQD LAGFLGNSIA ALEKPLSEIE
TDFSAYQIPT EPKFVSDYAD EIMQNLVAHS VHTSAPSFIG HMTSALPYFV LPLSKMMVGL
NQNLVKIETS KAFTPLERQV LGMMHNLVYQ QSDDFYHQWM HSANHSLGAF CSGGTVANIT
ALWIARNRLL QPRGDFKGVT REGMTKALRF YGYDDLAILV SDRGHYSLGK TADLLGIGRD
NIISIPTDEH HKVDVAAMRD AAEKLAQQNI KVMAIVGIAG TTETGNVDPL TELAALASEL
NCHFHVDAAW GGASLLSKKY SHLLKGIELA DSVTIDAHKQ MYVPMGAGMV LFKDPELAKA
IVHHAEYILR VGSKDLGSQT LEGSRPGMAM LVHACLQIIG RDGYEILINN SLEKARYFGS
IIDQHADFEL VTAPELCLLT YRYVPKSVQA ILTTALANQD SALVASINEL LDGLTQFIQK
HQREQGKSFV SRTRIKPAKY LRQPTTVFRV VLANPLTSHQ ILHDVLTEQV EIAALDSEYL
PQLLAL
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