| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sfri_2580 |
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| Symbol | |
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| ID | 4279487 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella frigidimarina NCIMB 400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008345 |
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| Strand | + |
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| Start bp | 3084530 |
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| End bp | 3086155 |
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| Gene Length | 1626 bp |
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| Protein Length | 541 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638135373 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_751259 |
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| Protein GI | 114563746 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTGTTA TAGTAAAACG CTGGTATCAG CAGATGTCTT TATGTCTCTC CAGTATCGTG
CTGGCTGCAT GCGGACAAGT GCAATTGCCT TCTGGCCTGG TGTATTGCAG CGAAGGTAAC
CCTGAAAGCT TTAACCCTCA ACTTGTTACT TCAGGTACCA CTATTGATGC CACTTCACAT
CAAATTTACA GTAGACTCGT TAATTACAGC CAAGAAAAAG CCGAGATCAC ACCTGGATTG
GCCACATCAT GGCAGGTGTC CGATGATGGT TTAAGCTATG TTTTTACTTT ACGTGAACAT
GTGAGTTTTC ATAAAACTCG CCATTTTACT CCCGCAAGAG ACTTTAATGC CGATGATGTG
TTGTTTTCAT TTAATCGGAT TATTGATCCA TTACACCCAT ATCATCTAGT CAGCAGAACC
GGTTATCCTT TTTTTCAAAG TATTGGTTTT GCTGATTTAA TTGGCTACAT TGAAAAAGTA
AACGACTACC AGGTTATCTT TCATTTAACT CGAAAAGACG CTTCTTTTTT ATCTAATTTG
GCTACTGATT TTGCCGTTGT ATTATCGGCA GAATATGGTT ATCAACTGTT AGCCCAAGGC
ACTCCTGAAG ATATCGATTA CTACGCAGTA GGCACAGGAC CTTTTCAGCT CAGCCAGTAT
GTGAAAAACG AATATATTCG CTTTAAAAAG AATCCTGTCT ATTGGGGCCC TACGGTTGAA
ATTGATCAAT TAGTATTTGA TATCACCCCA AGAAGCACAG CACGAATTGC TAAATTAATT
ACCGGAGACT GCAGCGTGTC TGCATTACCC AAAGCTGGTG AGTTGGCAGT GCTTGACCAA
CATAAAGATA TTATTATCGA TGCTAAACCT GGACTAAACG TAGCATTTTG GGCATTTAAC
ACTCAAAAAC CGCCATTAGA TGATGTTCGT GTAAGACGAG CACTTGCGCA TGCTATTGAT
AAAAATAATA TTCTAGACGT GGTATATAAC GATACCGCTG TGGAGGCGAC AGGTGTTTTA
CCTCCGGCAT CTTGGGCTTA CAGCAAAAAC TTATCTCCAA ATGAATATAA CCCAGAAAAA
GCCAAAGTAT TACTGCACCA AGCAGGTGTA TCTAACTTAT CCATTAATGT GTGGGCCATG
CCTGTTGCAC GAATTTATAA TCCGAGTGCA TTGAAAACAG CGGAGCTCAT TCAGGCCGAT
TTAGCCCGTA TTGGCGTAAA ACTGAATATC ATTAGCTATG ATTGGAGTGT ATTCACCCAA
AAGCTAGCCA GTTCGAATTA TGATTCAGTG TTGATTGGTT GGAATGCGGA TAATAGCGAT
CCAGATAACT TTTTTACTCC ATTGTTAAGC TGCGCCGCAT TAGCCTCTAA CAATAATCGC
TCTCGCTGGT GCAACAAAGA CTTTGAACAC CTGCTAACCC AAGCTCAGAG TGTATCGACT
CAACCTGAAC GCAAAGCATT TTATCAATCA GCAGAAGCTA TTATTAGCGA TCAAGTTCCG
CTAGTAACAA TCGCACATGC CAAAAAAGTG GTGTTGAAGA AAAGCAATAT TACCGCCATG
CAAATTAGGC CTTATGGCGG TATTTCCTTC GCCAAAACAA CTCAAGCAAT AGAGGGAACT
GAATAA
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| Protein sequence | MPVIVKRWYQ QMSLCLSSIV LAACGQVQLP SGLVYCSEGN PESFNPQLVT SGTTIDATSH
QIYSRLVNYS QEKAEITPGL ATSWQVSDDG LSYVFTLREH VSFHKTRHFT PARDFNADDV
LFSFNRIIDP LHPYHLVSRT GYPFFQSIGF ADLIGYIEKV NDYQVIFHLT RKDASFLSNL
ATDFAVVLSA EYGYQLLAQG TPEDIDYYAV GTGPFQLSQY VKNEYIRFKK NPVYWGPTVE
IDQLVFDITP RSTARIAKLI TGDCSVSALP KAGELAVLDQ HKDIIIDAKP GLNVAFWAFN
TQKPPLDDVR VRRALAHAID KNNILDVVYN DTAVEATGVL PPASWAYSKN LSPNEYNPEK
AKVLLHQAGV SNLSINVWAM PVARIYNPSA LKTAELIQAD LARIGVKLNI ISYDWSVFTQ
KLASSNYDSV LIGWNADNSD PDNFFTPLLS CAALASNNNR SRWCNKDFEH LLTQAQSVST
QPERKAFYQS AEAIISDQVP LVTIAHAKKV VLKKSNITAM QIRPYGGISF AKTTQAIEGT
E
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